miRNA display CGI


Results 41 - 60 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 180674 0.66 0.686519
Target:  5'- gGGGaacuCGCCG-GCCGCucccggcgcccGGCGGGCGGAc- -3'
miRNA:   3'- -UCC----GCGGCuCGGCG-----------CUGUCCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 129057 0.66 0.686519
Target:  5'- uGGCGCgCGAcgguguGUCGCGGCuGGCGGcGGa -3'
miRNA:   3'- uCCGCG-GCU------CGGCGCUGuCCGUC-UCg -5'
10810 3' -62.2 NC_002794.1 + 185367 0.66 0.685561
Target:  5'- cGG-GCCGAacGCCGCGAgCgAGGCcagccagaagacgAGGGCg -3'
miRNA:   3'- uCCgCGGCU--CGGCGCU-G-UCCG-------------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 146905 0.66 0.685561
Target:  5'- aAGGCGCuCGGGCgCGgGGaucGGCcggacggAGAGCg -3'
miRNA:   3'- -UCCGCG-GCUCG-GCgCUgu-CCG-------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 125833 0.66 0.680761
Target:  5'- cGGCGCCcugcuGCUGCGcugccggcuggacaaGCGGGCcgugugggAGAGCu -3'
miRNA:   3'- uCCGCGGcu---CGGCGC---------------UGUCCG--------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 125689 0.66 0.676914
Target:  5'- cGGGCGaCGuguugcuGCgCGUGACGGuggaGCGGAGCg -3'
miRNA:   3'- -UCCGCgGCu------CG-GCGCUGUC----CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 48165 0.66 0.676914
Target:  5'- cGGCGCCGcuucacGCCGCuGCA-GCGGAacuGCg -3'
miRNA:   3'- uCCGCGGCu-----CGGCGcUGUcCGUCU---CG- -5'
10810 3' -62.2 NC_002794.1 + 102707 0.66 0.676914
Target:  5'- ---gGCCGGGCCGCcgGACGGGCGc-GCc -3'
miRNA:   3'- uccgCGGCUCGGCG--CUGUCCGUcuCG- -5'
10810 3' -62.2 NC_002794.1 + 49014 0.66 0.676914
Target:  5'- -cGCGCCGcggcGGCCGCGGCGucguccGGCGcGGUc -3'
miRNA:   3'- ucCGCGGC----UCGGCGCUGU------CCGUcUCG- -5'
10810 3' -62.2 NC_002794.1 + 145894 0.66 0.676914
Target:  5'- -aGCGgCGAG-CGCGACGGG-GGAGUc -3'
miRNA:   3'- ucCGCgGCUCgGCGCUGUCCgUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 108378 0.66 0.676914
Target:  5'- cGGGCGCCgGAGCggggaGCGGaggcuccGGCGGcGGCg -3'
miRNA:   3'- -UCCGCGG-CUCGg----CGCUgu-----CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 32261 0.66 0.676914
Target:  5'- uGGCGCuCGAcgGCCGgcCGAUcGGC-GAGCg -3'
miRNA:   3'- uCCGCG-GCU--CGGC--GCUGuCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 182262 0.66 0.676914
Target:  5'- cAGcGCGCCGAGUCccgaGCGGCcucccaugacgGGGCGG-GUg -3'
miRNA:   3'- -UC-CGCGGCUCGG----CGCUG-----------UCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 187803 0.66 0.676914
Target:  5'- -cGCGaagCGAGCgaGCGAguGaGCGGAGCg -3'
miRNA:   3'- ucCGCg--GCUCGg-CGCUguC-CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 142963 0.66 0.676914
Target:  5'- cGGCGUCGAGCuccuCGuCGAgGGGCu--GCg -3'
miRNA:   3'- uCCGCGGCUCG----GC-GCUgUCCGucuCG- -5'
10810 3' -62.2 NC_002794.1 + 116383 0.66 0.675952
Target:  5'- uGGCGUgCGGGUCGaaGACGaagguguGGCGGGGCg -3'
miRNA:   3'- uCCGCG-GCUCGGCg-CUGU-------CCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 74079 0.66 0.675952
Target:  5'- cGGCccuccucGCCGAGUCGgGACAGcuGCGGcuGCu -3'
miRNA:   3'- uCCG-------CGGCUCGGCgCUGUC--CGUCu-CG- -5'
10810 3' -62.2 NC_002794.1 + 130465 0.66 0.675952
Target:  5'- gAGGCGCUGgcGGCuugcgugCGCGACAugauGGCGcAGCg -3'
miRNA:   3'- -UCCGCGGC--UCG-------GCGCUGU----CCGUcUCG- -5'
10810 3' -62.2 NC_002794.1 + 115935 0.66 0.671135
Target:  5'- cGGCggGCCGGcccGCCGCgugucgccggggaccGugGGGgGGAGCg -3'
miRNA:   3'- uCCG--CGGCU---CGGCG---------------CugUCCgUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 136716 0.66 0.667276
Target:  5'- cAGGCGCCGGuCCcgGCGucCAGGCGGucgaGGUu -3'
miRNA:   3'- -UCCGCGGCUcGG--CGCu-GUCCGUC----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.