miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 56917 0.66 0.667276
Target:  5'- cGGGCGCCGGGCUGCc---GGCcucGCa -3'
miRNA:   3'- -UCCGCGGCUCGGCGcuguCCGucuCG- -5'
10810 3' -62.2 NC_002794.1 + 110454 0.66 0.667276
Target:  5'- gAGGcCGgCGAGCCGgcucgucggcuCGGgGGGUAGAGa -3'
miRNA:   3'- -UCC-GCgGCUCGGC-----------GCUgUCCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 149464 0.66 0.667276
Target:  5'- gGGGCgGUCGAGgaGCGAgGGGgGGcGGCa -3'
miRNA:   3'- -UCCG-CGGCUCggCGCUgUCCgUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 179661 0.66 0.667276
Target:  5'- cGGGCucGCCGgacggcacccgcGGCgGCGACGguGGCGGcGGCg -3'
miRNA:   3'- -UCCG--CGGC------------UCGgCGCUGU--CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 117692 0.66 0.667276
Target:  5'- uAGGCcUCGcacGCCGCGACGGcGUGGcAGCu -3'
miRNA:   3'- -UCCGcGGCu--CGGCGCUGUC-CGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 53253 0.66 0.667276
Target:  5'- -cGCGCCGGcgucGCCGCGcgACaacgGGGCGgcGAGCg -3'
miRNA:   3'- ucCGCGGCU----CGGCGC--UG----UCCGU--CUCG- -5'
10810 3' -62.2 NC_002794.1 + 103789 0.66 0.667276
Target:  5'- cGGCgGCUGAGCUugaggugcgccuGCGAC-GGCGGcGCc -3'
miRNA:   3'- uCCG-CGGCUCGG------------CGCUGuCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 79438 0.66 0.667276
Target:  5'- cGGCGgCG-GCgGCGAcCGGcGCGGAGa -3'
miRNA:   3'- uCCGCgGCuCGgCGCU-GUC-CGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 119496 0.66 0.667276
Target:  5'- -uGCGUCcucgGGGUCGuCGGCGGcGCGGAGCc -3'
miRNA:   3'- ucCGCGG----CUCGGC-GCUGUC-CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 136716 0.66 0.667276
Target:  5'- cAGGCGCCGGuCCcgGCGucCAGGCGGucgaGGUu -3'
miRNA:   3'- -UCCGCGGCUcGG--CGCu-GUCCGUC----UCG- -5'
10810 3' -62.2 NC_002794.1 + 142309 0.66 0.667276
Target:  5'- cAGGUGgCGgaGGCgGCGgcGCAGGCGGcggaGGCg -3'
miRNA:   3'- -UCCGCgGC--UCGgCGC--UGUCCGUC----UCG- -5'
10810 3' -62.2 NC_002794.1 + 36853 0.66 0.664379
Target:  5'- uAGGUGUgCGgagaccgccacugcAGCCGCGcCAGGUAGcGCg -3'
miRNA:   3'- -UCCGCG-GC--------------UCGGCGCuGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 94208 0.67 0.657612
Target:  5'- -uGCGCUugugacgguGGCgGCGACGGGCGG-GCg -3'
miRNA:   3'- ucCGCGGc--------UCGgCGCUGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 140014 0.67 0.657612
Target:  5'- gAGGcCGCgGAgGCCGCGGCccccgcGGGCGGcGGg -3'
miRNA:   3'- -UCC-GCGgCU-CGGCGCUG------UCCGUC-UCg -5'
10810 3' -62.2 NC_002794.1 + 47945 0.67 0.657612
Target:  5'- cGGCGCCGcgcGUCcCGGCGccGGCuGGGCg -3'
miRNA:   3'- uCCGCGGCu--CGGcGCUGU--CCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 189867 0.67 0.657612
Target:  5'- cGGCGUCGucGCCGcCGACcGGCccgcucGGGCc -3'
miRNA:   3'- uCCGCGGCu-CGGC-GCUGuCCGu-----CUCG- -5'
10810 3' -62.2 NC_002794.1 + 115854 0.67 0.657612
Target:  5'- cGGGC-CUGGGaCgCGCGAgGGGUccGGGGCg -3'
miRNA:   3'- -UCCGcGGCUC-G-GCGCUgUCCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 128576 0.67 0.656645
Target:  5'- cGGCGUCGuGUacacguuCGCGACccugAGGCggcaGGAGCg -3'
miRNA:   3'- uCCGCGGCuCG-------GCGCUG----UCCG----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 88071 0.67 0.655677
Target:  5'- aGGGgGCgGGGCCGCGGUuugaacgGGGCGuggugauGAGCu -3'
miRNA:   3'- -UCCgCGgCUCGGCGCUG-------UCCGU-------CUCG- -5'
10810 3' -62.2 NC_002794.1 + 100818 0.67 0.64793
Target:  5'- -cGUGCCGGGCgGCGgggGCcGGCAGccgGGCu -3'
miRNA:   3'- ucCGCGGCUCGgCGC---UGuCCGUC---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.