miRNA display CGI


Results 81 - 100 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 100818 0.67 0.64793
Target:  5'- -cGUGCCGGGCgGCGgggGCcGGCAGccgGGCu -3'
miRNA:   3'- ucCGCGGCUCGgCGC---UGuCCGUC---UCG- -5'
10810 3' -62.2 NC_002794.1 + 54619 0.67 0.646961
Target:  5'- -aGCGaCGAGuuacuguugcacaCCGCGGCGGGCAGAa- -3'
miRNA:   3'- ucCGCgGCUC-------------GGCGCUGUCCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 53045 0.67 0.638237
Target:  5'- uGGUGCCGcGGCUccaGCG-UAGGCAGcGCc -3'
miRNA:   3'- uCCGCGGC-UCGG---CGCuGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 48040 0.67 0.638237
Target:  5'- cGGaCGCCGAGUgCGUGcUGGGCAcGGCg -3'
miRNA:   3'- uCC-GCGGCUCG-GCGCuGUCCGUcUCG- -5'
10810 3' -62.2 NC_002794.1 + 82171 0.67 0.638237
Target:  5'- cGGCGcCCGAGCCauaaaGCc-CGGGCGccccGAGCg -3'
miRNA:   3'- uCCGC-GGCUCGG-----CGcuGUCCGU----CUCG- -5'
10810 3' -62.2 NC_002794.1 + 44422 0.67 0.638237
Target:  5'- cGGCGCCGAGCgGCucgacGACAccGGCGc-GCc -3'
miRNA:   3'- uCCGCGGCUCGgCG-----CUGU--CCGUcuCG- -5'
10810 3' -62.2 NC_002794.1 + 31997 0.67 0.638237
Target:  5'- -uGCGUgggCGAGCCGacgcaGAcCAGGCAGGGg -3'
miRNA:   3'- ucCGCG---GCUCGGCg----CU-GUCCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 50771 0.67 0.638237
Target:  5'- cGGCGgCGAcGgCGCGucuCGGGCGGcGCc -3'
miRNA:   3'- uCCGCgGCU-CgGCGCu--GUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 112107 0.67 0.638237
Target:  5'- cAGGCGC--GGCCGggaCGACGGcGCGGGGa -3'
miRNA:   3'- -UCCGCGgcUCGGC---GCUGUC-CGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 82645 0.67 0.638237
Target:  5'- cGGCGCCaGAagcGCCGCGcucgacgccgcGCcGGCGGAucGCa -3'
miRNA:   3'- uCCGCGG-CU---CGGCGC-----------UGuCCGUCU--CG- -5'
10810 3' -62.2 NC_002794.1 + 123800 0.67 0.638237
Target:  5'- uGGCGCCGuucggGGgCGCgGACGaGCAGgAGCg -3'
miRNA:   3'- uCCGCGGC-----UCgGCG-CUGUcCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 147937 0.67 0.638237
Target:  5'- gGGGCGUCGuGUaCGCGuacucucCGGGCuccGAGCg -3'
miRNA:   3'- -UCCGCGGCuCG-GCGCu------GUCCGu--CUCG- -5'
10810 3' -62.2 NC_002794.1 + 94493 0.67 0.637267
Target:  5'- cGGC-CgCGGGCCGUGGCGGggaugaauacguuGCAGAGa -3'
miRNA:   3'- uCCGcG-GCUCGGCGCUGUC-------------CGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 54263 0.67 0.628539
Target:  5'- cGGCGCCGcGUCGgGccaaaccguGCAGacgcaGCAGGGCg -3'
miRNA:   3'- uCCGCGGCuCGGCgC---------UGUC-----CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 49841 0.67 0.628539
Target:  5'- gAGGCGCCGccauuCCGCGuC-GGCGGcGCc -3'
miRNA:   3'- -UCCGCGGCuc---GGCGCuGuCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 11862 0.67 0.628539
Target:  5'- cGGCGacgaccgcCCGccCCGCGACGGGUccucGAGCg -3'
miRNA:   3'- uCCGC--------GGCucGGCGCUGUCCGu---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 118667 0.67 0.628539
Target:  5'- uGGGCGCgacgccCGcGGCCGCcGCcGGCGGcAGCg -3'
miRNA:   3'- -UCCGCG------GC-UCGGCGcUGuCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 108317 0.67 0.627569
Target:  5'- cGGCGgUGGGUCuuggacgGCGGCGcaggaggagguGGCGGAGCg -3'
miRNA:   3'- uCCGCgGCUCGG-------CGCUGU-----------CCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 137597 0.67 0.618844
Target:  5'- gGGGagcCGCCGccggcGGUCGCGGC-GGCGGuGCc -3'
miRNA:   3'- -UCC---GCGGC-----UCGGCGCUGuCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 105916 0.67 0.618844
Target:  5'- cGGCGCUaccGCCGCcgccgGACGGGCuGGAcGCg -3'
miRNA:   3'- uCCGCGGcu-CGGCG-----CUGUCCG-UCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.