miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 10650 0.66 0.705601
Target:  5'- cGGCG-CGAGCC-CGACGaGCgucuGGAGCc -3'
miRNA:   3'- uCCGCgGCUCGGcGCUGUcCG----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 10867 0.69 0.495749
Target:  5'- cGGaaGCCGAGCgugacCGaCGACGGGCGG-GCg -3'
miRNA:   3'- uCCg-CGGCUCG-----GC-GCUGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 11536 0.73 0.310928
Target:  5'- cGGGCGaCCGAGgaCCGCGGCuGGUcgcuagaaugucaGGGGCa -3'
miRNA:   3'- -UCCGC-GGCUC--GGCGCUGuCCG-------------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 11862 0.67 0.628539
Target:  5'- cGGCGacgaccgcCCGccCCGCGACGGGUccucGAGCg -3'
miRNA:   3'- uCCGC--------GGCucGGCGCUGUCCGu---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 12199 0.7 0.434083
Target:  5'- cGGGCGCCGcucggacguGCCgGCGGCGucGGCGGcGCc -3'
miRNA:   3'- -UCCGCGGCu--------CGG-CGCUGU--CCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 14038 0.68 0.599487
Target:  5'- uGGCuGCUGGcgauccuuacGCCGaCGGCGauccuGGCGGAGCg -3'
miRNA:   3'- uCCG-CGGCU----------CGGC-GCUGU-----CCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 14602 0.76 0.217215
Target:  5'- gAGcGCGCCGGGCacCGCGACGGGgccggagaCGGGGCc -3'
miRNA:   3'- -UC-CGCGGCUCG--GCGCUGUCC--------GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 14655 0.68 0.570628
Target:  5'- cGGCGCCGcGGCgucgguccgacuCGCGGC-GGCGGucGCg -3'
miRNA:   3'- uCCGCGGC-UCG------------GCGCUGuCCGUCu-CG- -5'
10810 3' -62.2 NC_002794.1 + 17444 0.68 0.580216
Target:  5'- cGGCGCuCGGGcCCGCGACcgAGGUcGAa- -3'
miRNA:   3'- uCCGCG-GCUC-GGCGCUG--UCCGuCUcg -5'
10810 3' -62.2 NC_002794.1 + 18387 0.7 0.442624
Target:  5'- cGGCgcgauGCCGAGCCaaaCGACGGGUcuGGCa -3'
miRNA:   3'- uCCG-----CGGCUCGGc--GCUGUCCGucUCG- -5'
10810 3' -62.2 NC_002794.1 + 18680 0.66 0.705601
Target:  5'- cGGCuGCCGccGCCGUcuccGGCAcGGCGGcGGCg -3'
miRNA:   3'- uCCG-CGGCu-CGGCG----CUGU-CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 18852 0.66 0.693219
Target:  5'- gAGcGCGCCGucGCCGaucgccaacgccacCGACgccGGcGCGGAGCg -3'
miRNA:   3'- -UC-CGCGGCu-CGGC--------------GCUG---UC-CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 19253 0.66 0.71223
Target:  5'- -uGUGCCGAccgGCCGCGGCccccguGGCgcgucuccuggccuGGAGCc -3'
miRNA:   3'- ucCGCGGCU---CGGCGCUGu-----CCG--------------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 19443 0.68 0.589838
Target:  5'- cAGGCcCCGAGCgggcacgaGCGGC-GGCGGcGGCg -3'
miRNA:   3'- -UCCGcGGCUCGg-------CGCUGuCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 21460 0.66 0.686519
Target:  5'- cGGCGUC--GCCGUGACGgcaacgguGGCAGcGGCu -3'
miRNA:   3'- uCCGCGGcuCGGCGCUGU--------CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 21716 0.71 0.400903
Target:  5'- cGGGCGCUGcGUCGCGAUcgcgAGGCcGaAGCg -3'
miRNA:   3'- -UCCGCGGCuCGGCGCUG----UCCGuC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 23336 0.68 0.551574
Target:  5'- cGGUGCCGGucccGUCGCGACacucgaacacgcGGGCcGAGUc -3'
miRNA:   3'- uCCGCGGCU----CGGCGCUG------------UCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 23962 0.71 0.409046
Target:  5'- uGGCuCCGAGCCaGCGGCgAGGCc-GGCg -3'
miRNA:   3'- uCCGcGGCUCGG-CGCUG-UCCGucUCG- -5'
10810 3' -62.2 NC_002794.1 + 26653 0.7 0.477702
Target:  5'- cGGCgGCCG-GCuCGuCGGCgGGGUGGAGCg -3'
miRNA:   3'- uCCG-CGGCuCG-GC-GCUG-UCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 29752 0.69 0.486686
Target:  5'- cGGGCGCCGAGCCcGCGcCGaGCGucucGGCc -3'
miRNA:   3'- -UCCGCGGCUCGG-CGCuGUcCGUc---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.