miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 30933 0.7 0.450391
Target:  5'- cAGGCugcgcccGCCGcGCCGCGAgaCAGGCAcGGGa -3'
miRNA:   3'- -UCCG-------CGGCuCGGCGCU--GUCCGU-CUCg -5'
10810 3' -62.2 NC_002794.1 + 31997 0.67 0.638237
Target:  5'- -uGCGUgggCGAGCCGacgcaGAcCAGGCAGGGg -3'
miRNA:   3'- ucCGCG---GCUCGGCg----CU-GUCCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 32261 0.66 0.676914
Target:  5'- uGGCGCuCGAcgGCCGgcCGAUcGGC-GAGCg -3'
miRNA:   3'- uCCGCG-GCU--CGGC--GCUGuCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 32314 0.66 0.696084
Target:  5'- -cGCGCCG-GCCGCGGCcGG-AGAcaaGCc -3'
miRNA:   3'- ucCGCGGCuCGGCGCUGuCCgUCU---CG- -5'
10810 3' -62.2 NC_002794.1 + 32586 0.74 0.272955
Target:  5'- cGGUGCCgGGGCCGgGGCcgGGGcCGGGGCc -3'
miRNA:   3'- uCCGCGG-CUCGGCgCUG--UCC-GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 32856 0.73 0.318437
Target:  5'- cGGCagcgGCCGAGCCG--GCGGGCGGcGGCg -3'
miRNA:   3'- uCCG----CGGCUCGGCgcUGUCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 33105 0.68 0.599487
Target:  5'- cGGCGUgaacgUGAGCgGCcGCGGGCAGAc- -3'
miRNA:   3'- uCCGCG-----GCUCGgCGcUGUCCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 34251 0.69 0.495749
Target:  5'- cGGCuGCCGccgcaggcGGaCCGCGcGCAGGCGGccAGCg -3'
miRNA:   3'- uCCG-CGGC--------UC-GGCGC-UGUCCGUC--UCG- -5'
10810 3' -62.2 NC_002794.1 + 34719 0.75 0.232834
Target:  5'- cGGCGCCacGAGgCGCgGGCGGccGCAGAGCg -3'
miRNA:   3'- uCCGCGG--CUCgGCG-CUGUC--CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 34807 0.7 0.463501
Target:  5'- cGGC-CCGGGCCGCGcgacaccacccccucGCcGGCgccGGAGCg -3'
miRNA:   3'- uCCGcGGCUCGGCGC---------------UGuCCG---UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 34870 0.69 0.514098
Target:  5'- cGGGCGCCGcggacGCCGCGAac-GCGGAa- -3'
miRNA:   3'- -UCCGCGGCu----CGGCGCUgucCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 36263 0.66 0.705601
Target:  5'- uGGCGUCGuguaacGCCGCGucccgcgacuGCGGGUgcacGAGCu -3'
miRNA:   3'- uCCGCGGCu-----CGGCGC----------UGUCCGu---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 36853 0.66 0.664379
Target:  5'- uAGGUGUgCGgagaccgccacugcAGCCGCGcCAGGUAGcGCg -3'
miRNA:   3'- -UCCGCG-GC--------------UCGGCGCuGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 36916 0.72 0.361774
Target:  5'- cGGCGCCGGccCCGCGACc-GCGGAGg -3'
miRNA:   3'- uCCGCGGCUc-GGCGCUGucCGUCUCg -5'
10810 3' -62.2 NC_002794.1 + 36950 0.75 0.249387
Target:  5'- -cGCGUCGcGCgGCGGCAGGCAGucGCg -3'
miRNA:   3'- ucCGCGGCuCGgCGCUGUCCGUCu-CG- -5'
10810 3' -62.2 NC_002794.1 + 37336 0.71 0.392864
Target:  5'- gGGGC-CCGGGCgGCaGCAGGUcGGGCc -3'
miRNA:   3'- -UCCGcGGCUCGgCGcUGUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 37739 0.76 0.202502
Target:  5'- cGGCGCCGccGGCgGCGGCGcGGCGGcGCc -3'
miRNA:   3'- uCCGCGGC--UCGgCGCUGU-CCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 37874 0.68 0.570628
Target:  5'- cGGCGUcuCGGGCgGCGG-GGGCGGuGGCg -3'
miRNA:   3'- uCCGCG--GCUCGgCGCUgUCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 38136 0.68 0.550627
Target:  5'- gGGGCGUgGAGUCgagcaggagguagGCGAgCAGGCGGcuGCg -3'
miRNA:   3'- -UCCGCGgCUCGG-------------CGCU-GUCCGUCu-CG- -5'
10810 3' -62.2 NC_002794.1 + 38460 0.73 0.325381
Target:  5'- cGGCGC--GGCCGCGGCgcgcccuuuauGGGCGGAGg -3'
miRNA:   3'- uCCGCGgcUCGGCGCUG-----------UCCGUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.