miRNA display CGI


Results 41 - 60 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 41843 0.66 0.715062
Target:  5'- cGGGUcgaucagcaGCCccaGGCCGC--CGGGCAGGGCc -3'
miRNA:   3'- -UCCG---------CGGc--UCGGCGcuGUCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 42489 0.68 0.580216
Target:  5'- cGGgGCCGAGCggagaGUGugAGaaAGAGCg -3'
miRNA:   3'- uCCgCGGCUCGg----CGCugUCcgUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 43025 0.71 0.400903
Target:  5'- cAGGuCGUCG-GCCuccaucgcGCGGCAGGCcGAGCc -3'
miRNA:   3'- -UCC-GCGGCuCGG--------CGCUGUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 44113 0.74 0.255117
Target:  5'- cGaGCGCCGcaucAGCuCGCGGCAGuGUAGGGCc -3'
miRNA:   3'- uC-CGCGGC----UCG-GCGCUGUC-CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 44196 0.7 0.451259
Target:  5'- cGGGCgaaGCCGGGCCGaCGuccggcuCGGGCgccgAGGGCu -3'
miRNA:   3'- -UCCG---CGGCUCGGC-GCu------GUCCG----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 44238 0.69 0.514098
Target:  5'- cGGUGCCGGGCgGCu-CGGuGCcGGGCg -3'
miRNA:   3'- uCCGCGGCUCGgCGcuGUC-CGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 44283 0.68 0.599487
Target:  5'- gAGGaguccgcgccCGCCGGGCCgGCGA--GGCggGGAGCg -3'
miRNA:   3'- -UCC----------GCGGCUCGG-CGCUguCCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 44347 0.69 0.514098
Target:  5'- cGGCGCCG-GCgagaccgagagCGCGGCGGGCGcGAcguccGCg -3'
miRNA:   3'- uCCGCGGCuCG-----------GCGCUGUCCGU-CU-----CG- -5'
10810 3' -62.2 NC_002794.1 + 44422 0.67 0.638237
Target:  5'- cGGCGCCGAGCgGCucgacGACAccGGCGc-GCc -3'
miRNA:   3'- uCCGCGGCUCGgCG-----CUGU--CCGUcuCG- -5'
10810 3' -62.2 NC_002794.1 + 46327 0.68 0.570628
Target:  5'- cGGCGCCGucGCCGCGGacGGCuccauGCu -3'
miRNA:   3'- uCCGCGGCu-CGGCGCUguCCGucu--CG- -5'
10810 3' -62.2 NC_002794.1 + 47418 0.68 0.551574
Target:  5'- cGGCGCCGucgcgcggagcGCCagGCGuuuCAGGaCGGGGCa -3'
miRNA:   3'- uCCGCGGCu----------CGG--CGCu--GUCC-GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 47755 0.7 0.459986
Target:  5'- uGGCgGCCGuGGUCGCGgcacaacgcGCAGGUcGAGCg -3'
miRNA:   3'- uCCG-CGGC-UCGGCGC---------UGUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 47945 0.67 0.657612
Target:  5'- cGGCGCCGcgcGUCcCGGCGccGGCuGGGCg -3'
miRNA:   3'- uCCGCGGCu--CGGcGCUGU--CCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 48040 0.67 0.638237
Target:  5'- cGGaCGCCGAGUgCGUGcUGGGCAcGGCg -3'
miRNA:   3'- uCC-GCGGCUCG-GCGCuGUCCGUcUCG- -5'
10810 3' -62.2 NC_002794.1 + 48165 0.66 0.676914
Target:  5'- cGGCGCCGcuucacGCCGCuGCA-GCGGAacuGCg -3'
miRNA:   3'- uCCGCGGCu-----CGGCGcUGUcCGUCU---CG- -5'
10810 3' -62.2 NC_002794.1 + 48230 0.69 0.511328
Target:  5'- cAGGCgGCCGccaucguucGGCCGCagcaGgaucagcccgcagcACAGGCAGGGCu -3'
miRNA:   3'- -UCCG-CGGC---------UCGGCG----C--------------UGUCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 49014 0.66 0.676914
Target:  5'- -cGCGCCGcggcGGCCGCGGCGucguccGGCGcGGUc -3'
miRNA:   3'- ucCGCGGC----UCGGCGCUGU------CCGUcUCG- -5'
10810 3' -62.2 NC_002794.1 + 49220 0.76 0.217215
Target:  5'- gAGGCGCCGcgccgccaacagGGCCGuCGACGGGCGcccGCg -3'
miRNA:   3'- -UCCGCGGC------------UCGGC-GCUGUCCGUcu-CG- -5'
10810 3' -62.2 NC_002794.1 + 49391 0.72 0.337443
Target:  5'- cAGGcCGCCGccgucggccacggcGGCCGCGGC-GGCGGcGGCc -3'
miRNA:   3'- -UCC-GCGGC--------------UCGGCGCUGuCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 49841 0.67 0.628539
Target:  5'- gAGGCGCCGccauuCCGCGuC-GGCGGcGCc -3'
miRNA:   3'- -UCCGCGGCuc---GGCGCuGuCCGUCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.