miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 50771 0.67 0.638237
Target:  5'- cGGCGgCGAcGgCGCGucuCGGGCGGcGCc -3'
miRNA:   3'- uCCGCgGCU-CgGCGCu--GUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 51256 0.72 0.377103
Target:  5'- aAGGCGUgggggCGGGCCGggaGGCAGGCGcGGCc -3'
miRNA:   3'- -UCCGCG-----GCUCGGCg--CUGUCCGUcUCG- -5'
10810 3' -62.2 NC_002794.1 + 51366 0.74 0.285394
Target:  5'- gAGGCgGCCGccccguccGGCCgGCGACAGGCGcccuccGGGCu -3'
miRNA:   3'- -UCCG-CGGC--------UCGG-CGCUGUCCGU------CUCG- -5'
10810 3' -62.2 NC_002794.1 + 52575 0.66 0.667276
Target:  5'- cGGCGCCucaGAGCCGCaGCAcGCAGc-- -3'
miRNA:   3'- uCCGCGG---CUCGGCGcUGUcCGUCucg -5'
10810 3' -62.2 NC_002794.1 + 52645 0.72 0.332437
Target:  5'- cGGGaGCCgGAGCgGCGGCAGGCucuGCg -3'
miRNA:   3'- -UCCgCGG-CUCGgCGCUGUCCGucuCG- -5'
10810 3' -62.2 NC_002794.1 + 52904 0.66 0.686519
Target:  5'- cGGCGCCGccgccgucGCCGCcgccgucgcucGGCcGGCAcgcGAGCa -3'
miRNA:   3'- uCCGCGGCu-------CGGCG-----------CUGuCCGU---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 53045 0.67 0.638237
Target:  5'- uGGUGCCGcGGCUccaGCG-UAGGCAGcGCc -3'
miRNA:   3'- uCCGCGGC-UCGG---CGCuGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 53253 0.66 0.667276
Target:  5'- -cGCGCCGGcgucGCCGCGcgACaacgGGGCGgcGAGCg -3'
miRNA:   3'- ucCGCGGCU----CGGCGC--UG----UCCGU--CUCG- -5'
10810 3' -62.2 NC_002794.1 + 53298 0.72 0.332437
Target:  5'- cAGGUGCCGAGCgGuCGGCcGGCGccGCg -3'
miRNA:   3'- -UCCGCGGCUCGgC-GCUGuCCGUcuCG- -5'
10810 3' -62.2 NC_002794.1 + 54035 0.66 0.7018
Target:  5'- uGGGCGUC-AGCUGCGACccgucgacguggcGGCAGAu- -3'
miRNA:   3'- -UCCGCGGcUCGGCGCUGu------------CCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 54263 0.67 0.628539
Target:  5'- cGGCGCCGcGUCGgGccaaaccguGCAGacgcaGCAGGGCg -3'
miRNA:   3'- uCCGCGGCuCGGCgC---------UGUC-----CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 54619 0.67 0.646961
Target:  5'- -aGCGaCGAGuuacuguugcacaCCGCGGCGGGCAGAa- -3'
miRNA:   3'- ucCGCgGCUC-------------GGCGCUGUCCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 55168 0.72 0.346884
Target:  5'- cGaGCGCCGAGCgGgCGACucgAGGCGGcGGCc -3'
miRNA:   3'- uC-CGCGGCUCGgC-GCUG---UCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 55257 0.68 0.570628
Target:  5'- gAGGaCGCCGAagaGCCGgGGgGcGGCGGuGGCg -3'
miRNA:   3'- -UCC-GCGGCU---CGGCgCUgU-CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 55301 0.79 0.134585
Target:  5'- cGGCGgCGGcGUCGCGGCGGGCGcGGGCg -3'
miRNA:   3'- uCCGCgGCU-CGGCGCUGUCCGU-CUCG- -5'
10810 3' -62.2 NC_002794.1 + 55356 0.67 0.618844
Target:  5'- gAGGCgGCCGAggcgGCCgagGCGGCcgAGGCGGccgaGGCg -3'
miRNA:   3'- -UCCG-CGGCU----CGG---CGCUG--UCCGUC----UCG- -5'
10810 3' -62.2 NC_002794.1 + 55814 0.67 0.618844
Target:  5'- cGGGCG-CGGGCgCGCG-CugauGGCgaAGAGCa -3'
miRNA:   3'- -UCCGCgGCUCG-GCGCuGu---CCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 56186 0.79 0.1241
Target:  5'- uAGaGCaCCGGGCCGCGGCAGGCGuaggcgccccgcauGAGCa -3'
miRNA:   3'- -UC-CGcGGCUCGGCGCUGUCCGU--------------CUCG- -5'
10810 3' -62.2 NC_002794.1 + 56272 0.73 0.29178
Target:  5'- cGG-GCCGAGCaGCaGGC-GGCAGAGCa -3'
miRNA:   3'- uCCgCGGCUCGgCG-CUGuCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 56322 0.74 0.2669
Target:  5'- uGGCgGCCGuGGCCgGCGACGcGGCgaAGAGCa -3'
miRNA:   3'- uCCG-CGGC-UCGG-CGCUGU-CCG--UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.