miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 193821 0.68 0.551574
Target:  5'- uGGCGCCGAcgcGUCGCGGCGccGGCAc--- -3'
miRNA:   3'- uCCGCGGCU---CGGCGCUGU--CCGUcucg -5'
10810 3' -62.2 NC_002794.1 + 192960 0.72 0.346884
Target:  5'- cAGGCcgaCGAGCCGUG-CAGGacCAGGGCg -3'
miRNA:   3'- -UCCGcg-GCUCGGCGCuGUCC--GUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 192402 0.7 0.434083
Target:  5'- -cGCGCCGGgguagucgaaacGCCGCGACGGGUccgcGGccGGCg -3'
miRNA:   3'- ucCGCGGCU------------CGGCGCUGUCCG----UC--UCG- -5'
10810 3' -62.2 NC_002794.1 + 192238 0.66 0.705601
Target:  5'- cGGCGCUGccGUCGcCGACGGcGCGGuucGCu -3'
miRNA:   3'- uCCGCGGCu-CGGC-GCUGUC-CGUCu--CG- -5'
10810 3' -62.2 NC_002794.1 + 192012 0.67 0.616906
Target:  5'- cGGCGgUG-GCCGCGGCugcuguuucuguGGCGGcGGCg -3'
miRNA:   3'- uCCGCgGCuCGGCGCUGu-----------CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 191670 0.7 0.477702
Target:  5'- cGGCGCCG-GCaGCGGC-GGCGGcGUg -3'
miRNA:   3'- uCCGCGGCuCGgCGCUGuCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 190354 0.66 0.705601
Target:  5'- cAGGuCGUCG-GCCGCG-CGGcGCAGcgGGUg -3'
miRNA:   3'- -UCC-GCGGCuCGGCGCuGUC-CGUC--UCG- -5'
10810 3' -62.2 NC_002794.1 + 189867 0.67 0.657612
Target:  5'- cGGCGUCGucGCCGcCGACcGGCccgcucGGGCc -3'
miRNA:   3'- uCCGCGGCu-CGGC-GCUGuCCGu-----CUCG- -5'
10810 3' -62.2 NC_002794.1 + 189001 0.73 0.325381
Target:  5'- cGGCaGCUcuccaGGUCGCGACAGGCcaGGAGCc -3'
miRNA:   3'- uCCG-CGGc----UCGGCGCUGUCCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 188346 0.72 0.354274
Target:  5'- cGGCGCCGucgcgcccguccGGCCgGCGGC-GGCcgAGGGCg -3'
miRNA:   3'- uCCGCGGC------------UCGG-CGCUGuCCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 188267 0.68 0.589838
Target:  5'- -aGCGgCGGGCCGgGuaGCGGauGCAGGGCg -3'
miRNA:   3'- ucCGCgGCUCGGCgC--UGUC--CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 188155 0.68 0.580216
Target:  5'- cAGGUcgGCCGGGUCG-GACAGGuCGGAa- -3'
miRNA:   3'- -UCCG--CGGCUCGGCgCUGUCC-GUCUcg -5'
10810 3' -62.2 NC_002794.1 + 187803 0.66 0.676914
Target:  5'- -cGCGaagCGAGCgaGCGAguGaGCGGAGCg -3'
miRNA:   3'- ucCGCg--GCUCGg-CGCUguC-CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 187610 0.66 0.715062
Target:  5'- cGGCGUCgcccaGAGCCGCugGAgAGGCgcaAGAGa -3'
miRNA:   3'- uCCGCGG-----CUCGGCG--CUgUCCG---UCUCg -5'
10810 3' -62.2 NC_002794.1 + 187480 0.73 0.318437
Target:  5'- -cGCGCCGggccgaggacgaGGCCGCG-CAGGCggccAGGGCg -3'
miRNA:   3'- ucCGCGGC------------UCGGCGCuGUCCG----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 186746 0.7 0.442624
Target:  5'- -cGCGCCGAGCaCGUaccaggGGCAGGCcaGGCg -3'
miRNA:   3'- ucCGCGGCUCG-GCG------CUGUCCGucUCG- -5'
10810 3' -62.2 NC_002794.1 + 185474 0.66 0.696084
Target:  5'- cGGGCGgCG-GCCGCGGCgAGG-GGAccGCc -3'
miRNA:   3'- -UCCGCgGCuCGGCGCUG-UCCgUCU--CG- -5'
10810 3' -62.2 NC_002794.1 + 185367 0.66 0.685561
Target:  5'- cGG-GCCGAacGCCGCGAgCgAGGCcagccagaagacgAGGGCg -3'
miRNA:   3'- uCCgCGGCU--CGGCGCU-G-UCCG-------------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 185266 0.66 0.715062
Target:  5'- cGGaCGCCGccggccgagugGGCCGCcgGACAGGUc-AGCa -3'
miRNA:   3'- uCC-GCGGC-----------UCGGCG--CUGUCCGucUCG- -5'
10810 3' -62.2 NC_002794.1 + 184954 0.66 0.696084
Target:  5'- -uGCGCCGgcccgcgcAGCCGCucguCGGGCAGcacgcAGCg -3'
miRNA:   3'- ucCGCGGC--------UCGGCGcu--GUCCGUC-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.