miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 184571 0.68 0.580216
Target:  5'- -cGCGCC--GCCGCGGC-GGCGGcGGCc -3'
miRNA:   3'- ucCGCGGcuCGGCGCUGuCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 184449 0.68 0.551574
Target:  5'- gAGcGCGCCGcugccgcccgcgGGCCGCGcgaACGGcgcGCGGGGCc -3'
miRNA:   3'- -UC-CGCGGC------------UCGGCGC---UGUC---CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 183664 0.75 0.232834
Target:  5'- -cGCGCCGGGCCcgagcgcCGACGGGUcGAGCg -3'
miRNA:   3'- ucCGCGGCUCGGc------GCUGUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 183562 0.76 0.192724
Target:  5'- -cGCGCCGAGCCGcCGACacGGGCcuuuaauacggugGGGGCg -3'
miRNA:   3'- ucCGCGGCUCGGC-GCUG--UCCG-------------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 182945 0.72 0.354274
Target:  5'- cGGCGCCGGGCuCGagcCGAC-GGCGGccGGCu -3'
miRNA:   3'- uCCGCGGCUCG-GC---GCUGuCCGUC--UCG- -5'
10810 3' -62.2 NC_002794.1 + 182315 0.7 0.459986
Target:  5'- cGGGCGgaCGGGCgGUcgGGCGGGCGG-GCg -3'
miRNA:   3'- -UCCGCg-GCUCGgCG--CUGUCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 182262 0.66 0.676914
Target:  5'- cAGcGCGCCGAGUCccgaGCGGCcucccaugacgGGGCGG-GUg -3'
miRNA:   3'- -UC-CGCGGCUCGG----CGCUG-----------UCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 182221 0.72 0.376326
Target:  5'- gGGGCuCCGAcggucagGCCGCaGCAGGCcaggaGGAGCg -3'
miRNA:   3'- -UCCGcGGCU-------CGGCGcUGUCCG-----UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 182025 0.7 0.442624
Target:  5'- cGGCGuCCGGGCCGCcggcgaccaGAcCAGGUccugcgcguAGGGCg -3'
miRNA:   3'- uCCGC-GGCUCGGCG---------CU-GUCCG---------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 181775 0.66 0.715062
Target:  5'- uGGCGCCGcgccGCCGCGucucguuCGGGCcuuGGAu- -3'
miRNA:   3'- uCCGCGGCu---CGGCGCu------GUCCG---UCUcg -5'
10810 3' -62.2 NC_002794.1 + 181560 0.72 0.332437
Target:  5'- cGGuCGCCGGGCCaaucaggauCGACAGGCugcGGGCc -3'
miRNA:   3'- uCC-GCGGCUCGGc--------GCUGUCCGu--CUCG- -5'
10810 3' -62.2 NC_002794.1 + 181473 0.73 0.29178
Target:  5'- -cGCGCCGAGUCGC--CAGGCAgacGAGCc -3'
miRNA:   3'- ucCGCGGCUCGGCGcuGUCCGU---CUCG- -5'
10810 3' -62.2 NC_002794.1 + 181277 0.67 0.64793
Target:  5'- ---aGCCGAgguacGCCGCGAacaccaccccCAGGCcGAGCa -3'
miRNA:   3'- uccgCGGCU-----CGGCGCU----------GUCCGuCUCG- -5'
10810 3' -62.2 NC_002794.1 + 180674 0.66 0.686519
Target:  5'- gGGGaacuCGCCG-GCCGCucccggcgcccGGCGGGCGGAc- -3'
miRNA:   3'- -UCC----GCGGCuCGGCG-----------CUGUCCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 180065 0.68 0.569671
Target:  5'- uGGCGCUcaGAGUCaaGCGGCGGacgguaucggugcGCAGGGCu -3'
miRNA:   3'- uCCGCGG--CUCGG--CGCUGUC-------------CGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 179988 0.72 0.332437
Target:  5'- aAGGCGgUG-GCCGCGAC-GGCGG-GCc -3'
miRNA:   3'- -UCCGCgGCuCGGCGCUGuCCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 179661 0.66 0.667276
Target:  5'- cGGGCucGCCGgacggcacccgcGGCgGCGACGguGGCGGcGGCg -3'
miRNA:   3'- -UCCG--CGGC------------UCGgCGCUGU--CCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 175704 0.72 0.346884
Target:  5'- uGGCGCCGgucAGaUCGCcACAGGCgaGGAGCg -3'
miRNA:   3'- uCCGCGGC---UC-GGCGcUGUCCG--UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 159563 0.68 0.599487
Target:  5'- -cGUGUCGAGCCauucauuguUGGCGGGCGGGGUc -3'
miRNA:   3'- ucCGCGGCUCGGc--------GCUGUCCGUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 156406 0.76 0.217215
Target:  5'- cGGCGCCGcGGCCGCGGCcacGGCc-GGCg -3'
miRNA:   3'- uCCGCGGC-UCGGCGCUGu--CCGucUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.