miRNA display CGI


Results 41 - 60 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 3' -62.2 NC_002794.1 + 154440 0.69 0.511328
Target:  5'- -cGCGCCGAGCCGCacGACgcgaagcgacgaagAGGCGcuGCa -3'
miRNA:   3'- ucCGCGGCUCGGCG--CUG--------------UCCGUcuCG- -5'
10810 3' -62.2 NC_002794.1 + 154363 0.68 0.551574
Target:  5'- -cGCGCgGuccaGGCCGCGGCGgcGGCGG-GCa -3'
miRNA:   3'- ucCGCGgC----UCGGCGCUGU--CCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 152569 0.66 0.714119
Target:  5'- cGGCGCUucaccGCCGCGGCGGccgccacgucccuGCGGcGCg -3'
miRNA:   3'- uCCGCGGcu---CGGCGCUGUC-------------CGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 150545 0.66 0.715062
Target:  5'- cGGCGCCauGGCCGUcuCGGcGCuGGAGCu -3'
miRNA:   3'- uCCGCGGc-UCGGCGcuGUC-CG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 150215 0.7 0.459986
Target:  5'- cGGCugcuGCCGAGCUGCGuGCGacGGCAGcuggaAGCg -3'
miRNA:   3'- uCCG----CGGCUCGGCGC-UGU--CCGUC-----UCG- -5'
10810 3' -62.2 NC_002794.1 + 150090 0.75 0.249387
Target:  5'- -uGCGCUGGGCggaGCGugAGGCcGGAGCg -3'
miRNA:   3'- ucCGCGGCUCGg--CGCugUCCG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 149919 0.69 0.514098
Target:  5'- uGGGCuaCGA-CCGCGACcGGCAGAc- -3'
miRNA:   3'- -UCCGcgGCUcGGCGCUGuCCGUCUcg -5'
10810 3' -62.2 NC_002794.1 + 149464 0.66 0.667276
Target:  5'- gGGGCgGUCGAGgaGCGAgGGGgGGcGGCa -3'
miRNA:   3'- -UCCG-CGGCUCggCGCUgUCCgUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 148132 0.76 0.19318
Target:  5'- cGGGCGCgGGGCCGCcg-GGGCgAGGGCg -3'
miRNA:   3'- -UCCGCGgCUCGGCGcugUCCG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 148064 0.69 0.532718
Target:  5'- -cGCGCUcuggGAGCCGgGAguGGCcucGAGCg -3'
miRNA:   3'- ucCGCGG----CUCGGCgCUguCCGu--CUCG- -5'
10810 3' -62.2 NC_002794.1 + 147937 0.67 0.638237
Target:  5'- gGGGCGUCGuGUaCGCGuacucucCGGGCuccGAGCg -3'
miRNA:   3'- -UCCGCGGCuCG-GCGCu------GUCCGu--CUCG- -5'
10810 3' -62.2 NC_002794.1 + 147219 0.71 0.400903
Target:  5'- cGGgGCCGGGgcguuggCGCGAUGGGCccgAGAGCa -3'
miRNA:   3'- uCCgCGGCUCg------GCGCUGUCCG---UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 146989 0.7 0.434083
Target:  5'- cGGCGCCGccGGCCGaCGuC-GGCGGcGGCg -3'
miRNA:   3'- uCCGCGGC--UCGGC-GCuGuCCGUC-UCG- -5'
10810 3' -62.2 NC_002794.1 + 146905 0.66 0.685561
Target:  5'- aAGGCGCuCGGGCgCGgGGaucGGCcggacggAGAGCg -3'
miRNA:   3'- -UCCGCG-GCUCG-GCgCUgu-CCG-------UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 145921 0.72 0.361774
Target:  5'- -cGCGCCGAGCggaGgGGCcGGCgAGAGCg -3'
miRNA:   3'- ucCGCGGCUCGg--CgCUGuCCG-UCUCG- -5'
10810 3' -62.2 NC_002794.1 + 145894 0.66 0.676914
Target:  5'- -aGCGgCGAG-CGCGACGGG-GGAGUc -3'
miRNA:   3'- ucCGCgGCUCgGCGCUGUCCgUCUCG- -5'
10810 3' -62.2 NC_002794.1 + 145727 0.71 0.414807
Target:  5'- cGGGCGCUGgaGGCgGCGGCGccGGCAucgacggcgaccccGAGCg -3'
miRNA:   3'- -UCCGCGGC--UCGgCGCUGU--CCGU--------------CUCG- -5'
10810 3' -62.2 NC_002794.1 + 145333 0.73 0.29178
Target:  5'- cGGCGCuCGGGCC-CGAgCGGGCccGAGCu -3'
miRNA:   3'- uCCGCG-GCUCGGcGCU-GUCCGu-CUCG- -5'
10810 3' -62.2 NC_002794.1 + 145181 0.68 0.588874
Target:  5'- uGGUGUCGGagauggucGCCGCGGCGgcccuccGGCAGcGCu -3'
miRNA:   3'- uCCGCGGCU--------CGGCGCUGU-------CCGUCuCG- -5'
10810 3' -62.2 NC_002794.1 + 144969 0.7 0.442624
Target:  5'- cGGCGCCucgacgguGUCGCGACcGGCGccGGGCg -3'
miRNA:   3'- uCCGCGGcu------CGGCGCUGuCCGU--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.