miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10810 5' -55.6 NC_002794.1 + 128532 0.66 0.938807
Target:  5'- uGGCUCUgGACG--GUCgGGUGCGCc -3'
miRNA:   3'- uUCGAGAgCUGCauCAGgUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 78424 0.66 0.928816
Target:  5'- -cGCUCcCGGCGUcacGGUCgCGGCggACGCg -3'
miRNA:   3'- uuCGAGaGCUGCA---UCAG-GUCG--UGCGa -5'
10810 5' -55.6 NC_002794.1 + 115816 0.66 0.923463
Target:  5'- gAAGCUCuuccgccuggaUCGGCGgGGcCCGGCGgGCUc -3'
miRNA:   3'- -UUCGAG-----------AGCUGCaUCaGGUCGUgCGA- -5'
10810 5' -55.6 NC_002794.1 + 93007 0.67 0.899026
Target:  5'- cAAGCg--CGACGUGGUgcagcggcggaacCCGGUGCGCg -3'
miRNA:   3'- -UUCGagaGCUGCAUCA-------------GGUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 63072 0.67 0.893134
Target:  5'- cGAGCUCcugggcCGGCuGUAcUUCAGCGCGCUg -3'
miRNA:   3'- -UUCGAGa-----GCUG-CAUcAGGUCGUGCGA- -5'
10810 5' -55.6 NC_002794.1 + 187458 0.67 0.893134
Target:  5'- -cGCcgCUCGGCGUcGcUCGGCGCGCg -3'
miRNA:   3'- uuCGa-GAGCUGCAuCaGGUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 57817 0.67 0.886371
Target:  5'- -uGCcgCUCGACGgccAGgccuaCAGCACGCUg -3'
miRNA:   3'- uuCGa-GAGCUGCa--UCag---GUCGUGCGA- -5'
10810 5' -55.6 NC_002794.1 + 49021 0.67 0.886371
Target:  5'- cGGCggccgCGGCGUcGUCCGGCGCGg- -3'
miRNA:   3'- uUCGaga--GCUGCAuCAGGUCGUGCga -5'
10810 5' -55.6 NC_002794.1 + 14726 0.67 0.879383
Target:  5'- cGGCU-UCGGCucggGGUCCGGCGCGUc -3'
miRNA:   3'- uUCGAgAGCUGca--UCAGGUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 111022 0.68 0.857118
Target:  5'- cAGCUCccggUCGuCGUGaUCCGGCugGCg -3'
miRNA:   3'- uUCGAG----AGCuGCAUcAGGUCGugCGa -5'
10810 5' -55.6 NC_002794.1 + 86977 0.68 0.857118
Target:  5'- cGAGCUg-CGACGaGGUCCGGCG-GCUu -3'
miRNA:   3'- -UUCGAgaGCUGCaUCAGGUCGUgCGA- -5'
10810 5' -55.6 NC_002794.1 + 106050 0.68 0.849282
Target:  5'- cGGCUgaacUUCGucaACGUGGgccgCCGGCACGCg -3'
miRNA:   3'- uUCGA----GAGC---UGCAUCa---GGUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 93445 0.69 0.824619
Target:  5'- gAAGCUCaagcUCGACGgcGUCCcgccgccGCACGUg -3'
miRNA:   3'- -UUCGAG----AGCUGCauCAGGu------CGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 179456 0.69 0.824619
Target:  5'- -cGC-CUCGGuCGUGauGUUCAGCGCGCa -3'
miRNA:   3'- uuCGaGAGCU-GCAU--CAGGUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 143187 0.69 0.807289
Target:  5'- cGGUUCUCGACGUgcagcuucucgcGGUCcCAGCGCa-- -3'
miRNA:   3'- uUCGAGAGCUGCA------------UCAG-GUCGUGcga -5'
10810 5' -55.6 NC_002794.1 + 45732 0.69 0.789324
Target:  5'- cGGGCgUCUCcACGUAG-CgCAGCGCGCg -3'
miRNA:   3'- -UUCG-AGAGcUGCAUCaG-GUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 71238 0.7 0.780124
Target:  5'- uGGCggcCGGCGUGGaCCGGCACGUa -3'
miRNA:   3'- uUCGagaGCUGCAUCaGGUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 44428 0.7 0.780124
Target:  5'- cGAGCggCUCGACGaca-CCGGCGCGCc -3'
miRNA:   3'- -UUCGa-GAGCUGCaucaGGUCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 53447 0.7 0.770793
Target:  5'- -cGCUCUCcACGUAGagCC-GCACGCa -3'
miRNA:   3'- uuCGAGAGcUGCAUCa-GGuCGUGCGa -5'
10810 5' -55.6 NC_002794.1 + 132599 0.71 0.73232
Target:  5'- cGGGCg--UGACGUGGUUCAGCGgGCg -3'
miRNA:   3'- -UUCGagaGCUGCAUCAGGUCGUgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.