miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10811 3' -60.6 NC_002794.1 + 179200 0.66 0.787329
Target:  5'- cACGCCcCGgccGGCGGCaCGACGgaCGUg- -3'
miRNA:   3'- uUGCGGaGCa--CCGCCG-GCUGC--GCAag -5'
10811 3' -60.6 NC_002794.1 + 128651 0.66 0.787329
Target:  5'- aGAgGUCUUGUGGgacCGGCCG-CGCGa-- -3'
miRNA:   3'- -UUgCGGAGCACC---GCCGGCuGCGCaag -5'
10811 3' -60.6 NC_002794.1 + 107215 0.66 0.778485
Target:  5'- cGGCGCCgcCG-GGCGGCgcgCGACGgGggCg -3'
miRNA:   3'- -UUGCGGa-GCaCCGCCG---GCUGCgCaaG- -5'
10811 3' -60.6 NC_002794.1 + 55301 0.66 0.769521
Target:  5'- cGGCGgCggCGUcGCGGCgGGCGCGggCg -3'
miRNA:   3'- -UUGCgGa-GCAcCGCCGgCUGCGCaaG- -5'
10811 3' -60.6 NC_002794.1 + 187655 0.66 0.769521
Target:  5'- uACGCCUCGcGGUccacgacgaucGGgCGAUGCGggUCg -3'
miRNA:   3'- uUGCGGAGCaCCG-----------CCgGCUGCGCa-AG- -5'
10811 3' -60.6 NC_002794.1 + 33450 0.66 0.769521
Target:  5'- --gGaCCUCG-GGCGGCCgccgGACGCGc-- -3'
miRNA:   3'- uugC-GGAGCaCCGCCGG----CUGCGCaag -5'
10811 3' -60.6 NC_002794.1 + 191847 0.66 0.768619
Target:  5'- aGACGCgcaaUCGUGGUcgugaaaGGCCGGCgGCGg-- -3'
miRNA:   3'- -UUGCGg---AGCACCG-------CCGGCUG-CGCaag -5'
10811 3' -60.6 NC_002794.1 + 115083 0.66 0.760445
Target:  5'- --gGCCUC--GGCGGCCGcccgcagccGCGCGUcCg -3'
miRNA:   3'- uugCGGAGcaCCGCCGGC---------UGCGCAaG- -5'
10811 3' -60.6 NC_002794.1 + 54229 0.66 0.760445
Target:  5'- -cCGUCUCGgaugaaGCGGCCGAgCGCGcggUCc -3'
miRNA:   3'- uuGCGGAGCac----CGCCGGCU-GCGCa--AG- -5'
10811 3' -60.6 NC_002794.1 + 113874 0.66 0.751264
Target:  5'- aGGCGCgCUCGgccgcGGCGcgcGUCGGCGCGgUCu -3'
miRNA:   3'- -UUGCG-GAGCa----CCGC---CGGCUGCGCaAG- -5'
10811 3' -60.6 NC_002794.1 + 71305 0.66 0.751264
Target:  5'- cGGCGCgCUCG-GGCGGCgaGCGCGc-- -3'
miRNA:   3'- -UUGCG-GAGCaCCGCCGgcUGCGCaag -5'
10811 3' -60.6 NC_002794.1 + 121924 0.66 0.741986
Target:  5'- -cCGCCgCGggGGaagaGGCCGACGCGc-- -3'
miRNA:   3'- uuGCGGaGCa-CCg---CCGGCUGCGCaag -5'
10811 3' -60.6 NC_002794.1 + 184571 0.66 0.741986
Target:  5'- cGCGCCgccgCGgcggcGGCGGCC-ACGCGc-- -3'
miRNA:   3'- uUGCGGa---GCa----CCGCCGGcUGCGCaag -5'
10811 3' -60.6 NC_002794.1 + 134984 0.66 0.741986
Target:  5'- -cCGCCUCcugacggaGGgGGCCGACGUGa-- -3'
miRNA:   3'- uuGCGGAGca------CCgCCGGCUGCGCaag -5'
10811 3' -60.6 NC_002794.1 + 141417 0.66 0.741986
Target:  5'- cGAUGaCCUCGggGGCGGCgGGgGCGc-- -3'
miRNA:   3'- -UUGC-GGAGCa-CCGCCGgCUgCGCaag -5'
10811 3' -60.6 NC_002794.1 + 76771 0.66 0.739186
Target:  5'- uGCGCCUCGUagaaguccgagccgGGCGGgCGA-GCGg-- -3'
miRNA:   3'- uUGCGGAGCA--------------CCGCCgGCUgCGCaag -5'
10811 3' -60.6 NC_002794.1 + 101274 0.66 0.732621
Target:  5'- cGGCGCCg-GUGGCGGC-GGCGgGg-- -3'
miRNA:   3'- -UUGCGGagCACCGCCGgCUGCgCaag -5'
10811 3' -60.6 NC_002794.1 + 82666 0.66 0.732621
Target:  5'- cGACGCCgCGccGGCGGaUCGcACGcCGUUCg -3'
miRNA:   3'- -UUGCGGaGCa-CCGCC-GGC-UGC-GCAAG- -5'
10811 3' -60.6 NC_002794.1 + 49014 0.66 0.732621
Target:  5'- cGCGCCgc--GGCGGCCGcggcgucguccgGCGCGgUCg -3'
miRNA:   3'- uUGCGGagcaCCGCCGGC------------UGCGCaAG- -5'
10811 3' -60.6 NC_002794.1 + 49462 0.66 0.732621
Target:  5'- uGGCGCCgcCGUGacCGGCCGcCGCGggUCu -3'
miRNA:   3'- -UUGCGGa-GCACc-GCCGGCuGCGCa-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.