Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10811 | 5' | -54.9 | NC_002794.1 | + | 143743 | 0.66 | 0.964101 |
Target: 5'- --cGCCGGacgCG-CCGCCGGGGGGCu -3' miRNA: 3'- cacUGGCCcaaGUaGGCGGUUCUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 65150 | 0.66 | 0.964101 |
Target: 5'- -cGACUGGGUcgcCGUCCcguccguggcGCCGAGAccGGCg -3' miRNA: 3'- caCUGGCCCAa--GUAGG----------CGGUUCU--CUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 45022 | 0.66 | 0.96069 |
Target: 5'- cGUGGCCGGGUgc-UCCGCacccagcgcGGuGGCg -3' miRNA: 3'- -CACUGGCCCAaguAGGCGgu-------UCuCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 66959 | 0.66 | 0.96069 |
Target: 5'- -aGGCCGGcgagUCGcUCGCCGGGGGAg -3' miRNA: 3'- caCUGGCCca--AGUaGGCGGUUCUCUg -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 10188 | 0.66 | 0.957061 |
Target: 5'- -aGACCGGGcaaGUCCGCU---AGACc -3' miRNA: 3'- caCUGGCCCaagUAGGCGGuucUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 190714 | 0.66 | 0.953209 |
Target: 5'- ---gUCGGGUUC-UCCaGCCG-GAGACg -3' miRNA: 3'- cacuGGCCCAAGuAGG-CGGUuCUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 90380 | 0.66 | 0.949132 |
Target: 5'- -gGGCCGGGUcucgcCGUCCGCgAucGGGCu -3' miRNA: 3'- caCUGGCCCAa----GUAGGCGgUucUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 149345 | 0.67 | 0.942129 |
Target: 5'- -cGGCCGGGgucgCgggggcguggacggaGUCCGCCGAGAa-- -3' miRNA: 3'- caCUGGCCCaa--G---------------UAGGCGGUUCUcug -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 603 | 0.67 | 0.935513 |
Target: 5'- cGUGGCCGGGUgcggUCAggCgGCCcGGuguGGCg -3' miRNA: 3'- -CACUGGCCCA----AGUa-GgCGGuUCu--CUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 99444 | 0.67 | 0.930504 |
Target: 5'- -gGACCGGa-UCcgCCGCCGGGGGuauCg -3' miRNA: 3'- caCUGGCCcaAGuaGGCGGUUCUCu--G- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 111775 | 0.67 | 0.930504 |
Target: 5'- -gGGgCGGGcUCGUUCGUCAGGAG-Cg -3' miRNA: 3'- caCUgGCCCaAGUAGGCGGUUCUCuG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 108142 | 0.67 | 0.919778 |
Target: 5'- -cGGCUGGaUUCG-CCGCCGGGAG-Cg -3' miRNA: 3'- caCUGGCCcAAGUaGGCGGUUCUCuG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 1705 | 0.68 | 0.906277 |
Target: 5'- -gGACCGGGggCGUguuccUCGCCAAaaaagaggaaguccGAGGCa -3' miRNA: 3'- caCUGGCCCaaGUA-----GGCGGUU--------------CUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 1642 | 0.68 | 0.906277 |
Target: 5'- -gGACCGGGggCGUguuccUCGCCAAaaaagaggaaguccGAGGCg -3' miRNA: 3'- caCUGGCCCaaGUA-----GGCGGUU--------------CUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 117781 | 0.69 | 0.881301 |
Target: 5'- -aGcACCGGGUUCAuggUCCGCCGcacguucagcagcAGcGACu -3' miRNA: 3'- caC-UGGCCCAAGU---AGGCGGU-------------UCuCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 32612 | 0.69 | 0.874914 |
Target: 5'- -gGGCCGGGgaUCGggcCCGCCGacgaagagGGGGGCg -3' miRNA: 3'- caCUGGCCCa-AGUa--GGCGGU--------UCUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 44254 | 0.69 | 0.874914 |
Target: 5'- gGUG-CCGGGcggcUCggCCGCCGGG-GACg -3' miRNA: 3'- -CACuGGCCCa---AGuaGGCGGUUCuCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 149511 | 0.69 | 0.852391 |
Target: 5'- gGUGACgGGG-UCGU-CGCCGGGAG-Cg -3' miRNA: 3'- -CACUGgCCCaAGUAgGCGGUUCUCuG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 109325 | 0.7 | 0.819633 |
Target: 5'- aUGGCCGGGcgCua-CGCCAAGAuGCa -3' miRNA: 3'- cACUGGCCCaaGuagGCGGUUCUcUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 11894 | 0.71 | 0.793271 |
Target: 5'- -cGAgCGGGUUCGUgcUCGCCGGGuuccuGACg -3' miRNA: 3'- caCUgGCCCAAGUA--GGCGGUUCu----CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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