Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10811 | 5' | -54.9 | NC_002794.1 | + | 143029 | 0.71 | 0.765616 |
Target: 5'- -cGGCCGGGUcgacgugCAgggCCGCCAGguuGAGGCc -3' miRNA: 3'- caCUGGCCCAa------GUa--GGCGGUU---CUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 32650 | 0.71 | 0.765616 |
Target: 5'- -cGACCGGGgcgacggcgccgUccccgUCGUCCGCCAaccguccuccGGAGGCg -3' miRNA: 3'- caCUGGCCC------------A-----AGUAGGCGGU----------UCUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 67645 | 0.72 | 0.727144 |
Target: 5'- -aGcCCGGcGUccaCAUCCGCCAAGuGACa -3' miRNA: 3'- caCuGGCC-CAa--GUAGGCGGUUCuCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 121481 | 0.72 | 0.7173 |
Target: 5'- -cGACCGccGGUUCGgacgcggccUCCGCCGGGGcGACg -3' miRNA: 3'- caCUGGC--CCAAGU---------AGGCGGUUCU-CUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 126638 | 0.72 | 0.7173 |
Target: 5'- -cGACCGGGcgCccggaCgCGCCGAGAGACc -3' miRNA: 3'- caCUGGCCCaaGua---G-GCGGUUCUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 68338 | 1.1 | 0.003995 |
Target: 5'- gGUGACCGGGUUCAUCCGCCAAGAGACg -3' miRNA: 3'- -CACUGGCCCAAGUAGGCGGUUCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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