miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10811 5' -54.9 NC_002794.1 + 68338 1.1 0.003995
Target:  5'- gGUGACCGGGUUCAUCCGCCAAGAGACg -3'
miRNA:   3'- -CACUGGCCCAAGUAGGCGGUUCUCUG- -5'
10811 5' -54.9 NC_002794.1 + 121481 0.72 0.7173
Target:  5'- -cGACCGccGGUUCGgacgcggccUCCGCCGGGGcGACg -3'
miRNA:   3'- caCUGGC--CCAAGU---------AGGCGGUUCU-CUG- -5'
10811 5' -54.9 NC_002794.1 + 126638 0.72 0.7173
Target:  5'- -cGACCGGGcgCccggaCgCGCCGAGAGACc -3'
miRNA:   3'- caCUGGCCCaaGua---G-GCGGUUCUCUG- -5'
10811 5' -54.9 NC_002794.1 + 67645 0.72 0.727144
Target:  5'- -aGcCCGGcGUccaCAUCCGCCAAGuGACa -3'
miRNA:   3'- caCuGGCC-CAa--GUAGGCGGUUCuCUG- -5'
10811 5' -54.9 NC_002794.1 + 32650 0.71 0.765616
Target:  5'- -cGACCGGGgcgacggcgccgUccccgUCGUCCGCCAaccguccuccGGAGGCg -3'
miRNA:   3'- caCUGGCCC------------A-----AGUAGGCGGU----------UCUCUG- -5'
10811 5' -54.9 NC_002794.1 + 143029 0.71 0.765616
Target:  5'- -cGGCCGGGUcgacgugCAgggCCGCCAGguuGAGGCc -3'
miRNA:   3'- caCUGGCCCAa------GUa--GGCGGUU---CUCUG- -5'
10811 5' -54.9 NC_002794.1 + 11894 0.71 0.793271
Target:  5'- -cGAgCGGGUUCGUgcUCGCCGGGuuccuGACg -3'
miRNA:   3'- caCUgGCCCAAGUA--GGCGGUUCu----CUG- -5'
10811 5' -54.9 NC_002794.1 + 109325 0.7 0.819633
Target:  5'- aUGGCCGGGcgCua-CGCCAAGAuGCa -3'
miRNA:   3'- cACUGGCCCaaGuagGCGGUUCUcUG- -5'
10811 5' -54.9 NC_002794.1 + 149511 0.69 0.852391
Target:  5'- gGUGACgGGG-UCGU-CGCCGGGAG-Cg -3'
miRNA:   3'- -CACUGgCCCaAGUAgGCGGUUCUCuG- -5'
10811 5' -54.9 NC_002794.1 + 32612 0.69 0.874914
Target:  5'- -gGGCCGGGgaUCGggcCCGCCGacgaagagGGGGGCg -3'
miRNA:   3'- caCUGGCCCa-AGUa--GGCGGU--------UCUCUG- -5'
10811 5' -54.9 NC_002794.1 + 44254 0.69 0.874914
Target:  5'- gGUG-CCGGGcggcUCggCCGCCGGG-GACg -3'
miRNA:   3'- -CACuGGCCCa---AGuaGGCGGUUCuCUG- -5'
10811 5' -54.9 NC_002794.1 + 117781 0.69 0.881301
Target:  5'- -aGcACCGGGUUCAuggUCCGCCGcacguucagcagcAGcGACu -3'
miRNA:   3'- caC-UGGCCCAAGU---AGGCGGU-------------UCuCUG- -5'
10811 5' -54.9 NC_002794.1 + 1705 0.68 0.906277
Target:  5'- -gGACCGGGggCGUguuccUCGCCAAaaaagaggaaguccGAGGCa -3'
miRNA:   3'- caCUGGCCCaaGUA-----GGCGGUU--------------CUCUG- -5'
10811 5' -54.9 NC_002794.1 + 1642 0.68 0.906277
Target:  5'- -gGACCGGGggCGUguuccUCGCCAAaaaagaggaaguccGAGGCg -3'
miRNA:   3'- caCUGGCCCaaGUA-----GGCGGUU--------------CUCUG- -5'
10811 5' -54.9 NC_002794.1 + 108142 0.67 0.919778
Target:  5'- -cGGCUGGaUUCG-CCGCCGGGAG-Cg -3'
miRNA:   3'- caCUGGCCcAAGUaGGCGGUUCUCuG- -5'
10811 5' -54.9 NC_002794.1 + 99444 0.67 0.930504
Target:  5'- -gGACCGGa-UCcgCCGCCGGGGGuauCg -3'
miRNA:   3'- caCUGGCCcaAGuaGGCGGUUCUCu--G- -5'
10811 5' -54.9 NC_002794.1 + 111775 0.67 0.930504
Target:  5'- -gGGgCGGGcUCGUUCGUCAGGAG-Cg -3'
miRNA:   3'- caCUgGCCCaAGUAGGCGGUUCUCuG- -5'
10811 5' -54.9 NC_002794.1 + 603 0.67 0.935513
Target:  5'- cGUGGCCGGGUgcggUCAggCgGCCcGGuguGGCg -3'
miRNA:   3'- -CACUGGCCCA----AGUa-GgCGGuUCu--CUG- -5'
10811 5' -54.9 NC_002794.1 + 149345 0.67 0.942129
Target:  5'- -cGGCCGGGgucgCgggggcguggacggaGUCCGCCGAGAa-- -3'
miRNA:   3'- caCUGGCCCaa--G---------------UAGGCGGUUCUcug -5'
10811 5' -54.9 NC_002794.1 + 90380 0.66 0.949132
Target:  5'- -gGGCCGGGUcucgcCGUCCGCgAucGGGCu -3'
miRNA:   3'- caCUGGCCCAa----GUAGGCGgUucUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.