Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10811 | 5' | -54.9 | NC_002794.1 | + | 149345 | 0.67 | 0.942129 |
Target: 5'- -cGGCCGGGgucgCgggggcguggacggaGUCCGCCGAGAa-- -3' miRNA: 3'- caCUGGCCCaa--G---------------UAGGCGGUUCUcug -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 603 | 0.67 | 0.935513 |
Target: 5'- cGUGGCCGGGUgcggUCAggCgGCCcGGuguGGCg -3' miRNA: 3'- -CACUGGCCCA----AGUa-GgCGGuUCu--CUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 111775 | 0.67 | 0.930504 |
Target: 5'- -gGGgCGGGcUCGUUCGUCAGGAG-Cg -3' miRNA: 3'- caCUgGCCCaAGUAGGCGGUUCUCuG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 99444 | 0.67 | 0.930504 |
Target: 5'- -gGACCGGa-UCcgCCGCCGGGGGuauCg -3' miRNA: 3'- caCUGGCCcaAGuaGGCGGUUCUCu--G- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 1705 | 0.68 | 0.906277 |
Target: 5'- -gGACCGGGggCGUguuccUCGCCAAaaaagaggaaguccGAGGCa -3' miRNA: 3'- caCUGGCCCaaGUA-----GGCGGUU--------------CUCUG- -5' |
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10811 | 5' | -54.9 | NC_002794.1 | + | 68338 | 1.1 | 0.003995 |
Target: 5'- gGUGACCGGGUUCAUCCGCCAAGAGACg -3' miRNA: 3'- -CACUGGCCCAAGUAGGCGGUUCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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