miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 3' -53.6 NC_002794.1 + 190908 0.66 0.986731
Target:  5'- -aAACCGCGUCUgcucccacucccCGg--CC-CGCAGCc -3'
miRNA:   3'- gaUUGGCGCAGA------------GCuaaGGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 181977 0.66 0.986731
Target:  5'- -gAACgGCGUCUCcg-UCgaGCGCAGa -3'
miRNA:   3'- gaUUGgCGCAGAGcuaAGg-CGCGUCg -5'
10812 3' -53.6 NC_002794.1 + 23702 0.66 0.986731
Target:  5'- -aGGCCccgaaGCGUCcCGAacCgCGCGCGGCg -3'
miRNA:   3'- gaUUGG-----CGCAGaGCUaaG-GCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 82794 0.66 0.986731
Target:  5'- --cGCCGCGUCcacgCGcg-CCGCgacccGCGGCu -3'
miRNA:   3'- gauUGGCGCAGa---GCuaaGGCG-----CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 127192 0.66 0.986731
Target:  5'- --cGCCGCGgC-CGcagCCGCaGCAGCa -3'
miRNA:   3'- gauUGGCGCaGaGCuaaGGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 116221 0.66 0.986411
Target:  5'- -cGGCCGCGcggCUCGAgucgaugcccgCCGUGC-GCc -3'
miRNA:   3'- gaUUGGCGCa--GAGCUaa---------GGCGCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 44753 0.66 0.985073
Target:  5'- -aGACgGCGaCUCGucgccgucCCGaCGCAGCg -3'
miRNA:   3'- gaUUGgCGCaGAGCuaa-----GGC-GCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 123196 0.66 0.985073
Target:  5'- -cGGCCGCGUCUCGGagauggacCUGUacaucgucucgaGCGGCc -3'
miRNA:   3'- gaUUGGCGCAGAGCUaa------GGCG------------CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 80673 0.66 0.985073
Target:  5'- -gGACC-CGUCaCGAggucuucaaCGCGCAGCu -3'
miRNA:   3'- gaUUGGcGCAGaGCUaag------GCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 135747 0.66 0.985073
Target:  5'- --cGCCGCGccCUCGAggaUCagGCGguGCu -3'
miRNA:   3'- gauUGGCGCa-GAGCUa--AGg-CGCguCG- -5'
10812 3' -53.6 NC_002794.1 + 181204 0.66 0.985073
Target:  5'- -aGGCCGCgGUCU----UCCGaaaGCAGCg -3'
miRNA:   3'- gaUUGGCG-CAGAgcuaAGGCg--CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 126121 0.66 0.985073
Target:  5'- --cGCCGCG-CUCG--UCUGCGcCGGUu -3'
miRNA:   3'- gauUGGCGCaGAGCuaAGGCGC-GUCG- -5'
10812 3' -53.6 NC_002794.1 + 183982 0.66 0.985073
Target:  5'- --cACCGCGUC-CGccaCCGCGCccGCc -3'
miRNA:   3'- gauUGGCGCAGaGCuaaGGCGCGu-CG- -5'
10812 3' -53.6 NC_002794.1 + 18214 0.66 0.984899
Target:  5'- cCUAACCGCcUCUCacacgcacuauuaGAaaagCgCGCGCGGCc -3'
miRNA:   3'- -GAUUGGCGcAGAG-------------CUaa--G-GCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 90678 0.66 0.983263
Target:  5'- -cGGCCGCGUggcugUUCGugugCC-CGCGGCa -3'
miRNA:   3'- gaUUGGCGCA-----GAGCuaa-GGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 138570 0.66 0.983263
Target:  5'- ---uCCGuCGUCgcUCGAUcgaggcgcgUCgGCGCGGCg -3'
miRNA:   3'- gauuGGC-GCAG--AGCUA---------AGgCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 135707 0.66 0.983263
Target:  5'- -aGGuaGCG-CUCGAgcugCUGCGUAGCa -3'
miRNA:   3'- gaUUggCGCaGAGCUaa--GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 113235 0.66 0.983263
Target:  5'- -cGACCGcCGUCcagGAUcucCCGCuGCAGCg -3'
miRNA:   3'- gaUUGGC-GCAGag-CUAa--GGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 106961 0.66 0.983263
Target:  5'- -aGACaCGCGUCgcc---UCGCGCGGCg -3'
miRNA:   3'- gaUUG-GCGCAGagcuaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 61540 0.66 0.983263
Target:  5'- --cGCCGCGaagaCGAcgCCGCcGCGGCg -3'
miRNA:   3'- gauUGGCGCaga-GCUaaGGCG-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.