miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 3' -53.6 NC_002794.1 + 67234 1.13 0.003995
Target:  5'- gCUAACCGCGUCUCGAUUCCGCGCAGCa -3'
miRNA:   3'- -GAUUGGCGCAGAGCUAAGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 120454 0.85 0.227948
Target:  5'- --cGCCGCGUCggccuggcUCGAUUUCGCGCGGCc -3'
miRNA:   3'- gauUGGCGCAG--------AGCUAAGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 190345 0.79 0.455994
Target:  5'- -gAACUGCGUCaggUCGucggCCGCGCGGCg -3'
miRNA:   3'- gaUUGGCGCAG---AGCuaa-GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 82657 0.78 0.483852
Target:  5'- --cGCCGCG-CUCGAcgCCGCGcCGGCg -3'
miRNA:   3'- gauUGGCGCaGAGCUaaGGCGC-GUCG- -5'
10812 3' -53.6 NC_002794.1 + 89714 0.77 0.522207
Target:  5'- --cGCCGCGgugC-CGA-UCCGCGCGGCg -3'
miRNA:   3'- gauUGGCGCa--GaGCUaAGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 184825 0.77 0.571686
Target:  5'- -gGGCaCGCGUC-CGGgcgcaCCGCGCAGCg -3'
miRNA:   3'- gaUUG-GCGCAGaGCUaa---GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 150856 0.76 0.601923
Target:  5'- -cGGCCGCGUCUaCGccuauagCCgGCGCAGCg -3'
miRNA:   3'- gaUUGGCGCAGA-GCuaa----GG-CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 79283 0.75 0.682968
Target:  5'- -cGGCCGCGUCUU--UUCCuGCGUGGCc -3'
miRNA:   3'- gaUUGGCGCAGAGcuAAGG-CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 176482 0.74 0.689995
Target:  5'- -aGACCGUGUCggUUGGUUCUcucacgagcacgagGCGCAGCg -3'
miRNA:   3'- gaUUGGCGCAG--AGCUAAGG--------------CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 61871 0.74 0.693
Target:  5'- --cGCCGCGcgccgUCgUCGGcgCCGCGCGGCg -3'
miRNA:   3'- gauUGGCGC-----AG-AGCUaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 59285 0.74 0.693
Target:  5'- -aGAuCCGCucgccgCUCGAcgCCGCGCAGCg -3'
miRNA:   3'- gaUU-GGCGca----GAGCUaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 90380 0.74 0.702982
Target:  5'- -gGGCCGgGUCUCGccgUCCGCGaucgGGCu -3'
miRNA:   3'- gaUUGGCgCAGAGCua-AGGCGCg---UCG- -5'
10812 3' -53.6 NC_002794.1 + 113651 0.73 0.751831
Target:  5'- -cGGCCcgGCGUcCUCGGcgUCCaGCGCGGCg -3'
miRNA:   3'- gaUUGG--CGCA-GAGCUa-AGG-CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 156298 0.73 0.751831
Target:  5'- aUAAUCG-GUCUCGucgUCGCGCGGCc -3'
miRNA:   3'- gAUUGGCgCAGAGCuaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 130530 0.73 0.779967
Target:  5'- gCUGACCGUGa--CGAuUUCCGaCGCGGCg -3'
miRNA:   3'- -GAUUGGCGCagaGCU-AAGGC-GCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 150736 0.72 0.798087
Target:  5'- gCUGACCGCGUUcCcg-UgCGUGCAGCg -3'
miRNA:   3'- -GAUUGGCGCAGaGcuaAgGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 15276 0.72 0.798087
Target:  5'- -gAGCCGCGcggCUCcc-UCCGCGCgAGCg -3'
miRNA:   3'- gaUUGGCGCa--GAGcuaAGGCGCG-UCG- -5'
10812 3' -53.6 NC_002794.1 + 92945 0.72 0.80693
Target:  5'- --uGCCGCGUCaaGAaccggcccaUcCCGCGCGGCg -3'
miRNA:   3'- gauUGGCGCAGagCU---------AaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 126337 0.72 0.821601
Target:  5'- gCUGACCGcCGUCUucgugucccggcucCGAUUUCGcCGCuGCg -3'
miRNA:   3'- -GAUUGGC-GCAGA--------------GCUAAGGC-GCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 8742 0.72 0.832491
Target:  5'- -gAGCgCGUGUCUCGGgcgugUCGCGaCGGCg -3'
miRNA:   3'- gaUUG-GCGCAGAGCUaa---GGCGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.