miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 3' -53.6 NC_002794.1 + 54356 0.71 0.840662
Target:  5'- ---uCCGCGUCUCGAUggCCGUGaacauGCc -3'
miRNA:   3'- gauuGGCGCAGAGCUAa-GGCGCgu---CG- -5'
10812 3' -53.6 NC_002794.1 + 93981 0.71 0.848647
Target:  5'- cCUGACCGCG-CUCGGcgcggacgCCGgCGcCGGCg -3'
miRNA:   3'- -GAUUGGCGCaGAGCUaa------GGC-GC-GUCG- -5'
10812 3' -53.6 NC_002794.1 + 14479 0.71 0.848647
Target:  5'- --cGCCGCG-CUCGcugUUCGCgGCGGCg -3'
miRNA:   3'- gauUGGCGCaGAGCua-AGGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 194864 0.71 0.848647
Target:  5'- uCUGcCCGCGcCgcgCGAUgcacaggUCGCGCAGCu -3'
miRNA:   3'- -GAUuGGCGCaGa--GCUAa------GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 113883 0.71 0.848647
Target:  5'- -cGGCCGCGgcgCGcgUCgGCGCGGUc -3'
miRNA:   3'- gaUUGGCGCagaGCuaAGgCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 104302 0.71 0.848647
Target:  5'- -gGGCCGgGUgcaCUUGAgguuggCCGCGCAGUa -3'
miRNA:   3'- gaUUGGCgCA---GAGCUaa----GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 57916 0.71 0.859499
Target:  5'- -gGACCGCGUgcugcagaagCUCGAcuucgccgacgcgCUGCGCAGCc -3'
miRNA:   3'- gaUUGGCGCA----------GAGCUaa-----------GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 184140 0.71 0.871416
Target:  5'- -aGACCGUGgcgUUCGGaUCCGC-CGGCg -3'
miRNA:   3'- gaUUGGCGCa--GAGCUaAGGCGcGUCG- -5'
10812 3' -53.6 NC_002794.1 + 52633 0.7 0.878591
Target:  5'- --cGCCGCGUCgaaCGGgagCCGgaGCGGCg -3'
miRNA:   3'- gauUGGCGCAGa--GCUaa-GGCg-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 195109 0.7 0.878591
Target:  5'- --uACgGCGUCUCGugcgCC-CGCGGCg -3'
miRNA:   3'- gauUGgCGCAGAGCuaa-GGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 112265 0.7 0.878591
Target:  5'- -gGACCgGCGUCUCGuccucggccUCCGUGUcgGGCg -3'
miRNA:   3'- gaUUGG-CGCAGAGCua-------AGGCGCG--UCG- -5'
10812 3' -53.6 NC_002794.1 + 104926 0.7 0.885549
Target:  5'- --cGCCGCGUCUCuucGUUCuCGCccugcgucuGCAGCu -3'
miRNA:   3'- gauUGGCGCAGAGc--UAAG-GCG---------CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 63653 0.7 0.892287
Target:  5'- gUGACCGCcaacGUCUCGGacgacgaGCGCGGCc -3'
miRNA:   3'- gAUUGGCG----CAGAGCUaagg---CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 121313 0.7 0.892287
Target:  5'- -aGAUCgGCGguuggccCUCGAggcgCCGCGCGGCu -3'
miRNA:   3'- gaUUGG-CGCa------GAGCUaa--GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 82884 0.7 0.894919
Target:  5'- -cGugCGCGcCUCGcgUCCGCcucgccguccgccucGCGGCc -3'
miRNA:   3'- gaUugGCGCaGAGCuaAGGCG---------------CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 113287 0.7 0.8988
Target:  5'- ---cCCGCGUCUgc--UCgGCGCAGCg -3'
miRNA:   3'- gauuGGCGCAGAgcuaAGgCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 32406 0.7 0.902599
Target:  5'- aCUuGCUGCGgugcagcacgaagCUgaGAUUCUGCGCGGCg -3'
miRNA:   3'- -GAuUGGCGCa------------GAg-CUAAGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 88846 0.7 0.903224
Target:  5'- -gAACgGUGUCUCGggUUCGCGUcucgggaaaccgaaAGCg -3'
miRNA:   3'- gaUUGgCGCAGAGCuaAGGCGCG--------------UCG- -5'
10812 3' -53.6 NC_002794.1 + 88898 0.7 0.903224
Target:  5'- cCUAugCGCG-CUCGAgUgccgguuuuuaugcCCGCGguGCg -3'
miRNA:   3'- -GAUugGCGCaGAGCUaA--------------GGCGCguCG- -5'
10812 3' -53.6 NC_002794.1 + 119134 0.7 0.905085
Target:  5'- cCUGGCagGCG-UUCGGguggUCGCGCAGCa -3'
miRNA:   3'- -GAUUGg-CGCaGAGCUaa--GGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.