miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 3' -53.6 NC_002794.1 + 135707 0.66 0.983263
Target:  5'- -aGGuaGCG-CUCGAgcugCUGCGUAGCa -3'
miRNA:   3'- gaUUggCGCaGAGCUaa--GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 113235 0.66 0.983263
Target:  5'- -cGACCGcCGUCcagGAUcucCCGCuGCAGCg -3'
miRNA:   3'- gaUUGGC-GCAGag-CUAa--GGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 106961 0.66 0.983263
Target:  5'- -aGACaCGCGUCgcc---UCGCGCGGCg -3'
miRNA:   3'- gaUUG-GCGCAGagcuaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 148535 0.66 0.983263
Target:  5'- gCUucCCGUGcCUCGucggcUgCGCGCGGCu -3'
miRNA:   3'- -GAuuGGCGCaGAGCua---AgGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 190681 0.66 0.982882
Target:  5'- --cGCCGgGUCUCcacgcacaccUCCcgGCGCAGCg -3'
miRNA:   3'- gauUGGCgCAGAGcua-------AGG--CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 115881 0.66 0.981291
Target:  5'- -----gGCGUC-CGGggcgUCCGCGgAGCg -3'
miRNA:   3'- gauuggCGCAGaGCUa---AGGCGCgUCG- -5'
10812 3' -53.6 NC_002794.1 + 36930 0.66 0.981291
Target:  5'- -cGACCGCGgaggaGAaagUCCGCGUcGCg -3'
miRNA:   3'- gaUUGGCGCagag-CUa--AGGCGCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 187001 0.66 0.981291
Target:  5'- -cGGCUGCGUCgucaGGUaCgGCGuCAGCg -3'
miRNA:   3'- gaUUGGCGCAGag--CUAaGgCGC-GUCG- -5'
10812 3' -53.6 NC_002794.1 + 186848 0.66 0.981291
Target:  5'- -cAGCgCGCGgg-CGcugCCGUGCAGCa -3'
miRNA:   3'- gaUUG-GCGCagaGCuaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 58315 0.66 0.981291
Target:  5'- --cGCCGCG-CUCugcacgCCGCGCGuGCu -3'
miRNA:   3'- gauUGGCGCaGAGcuaa--GGCGCGU-CG- -5'
10812 3' -53.6 NC_002794.1 + 189067 0.66 0.97915
Target:  5'- --uACgGCGUCUCGgg-CCGC-CGGUa -3'
miRNA:   3'- gauUGgCGCAGAGCuaaGGCGcGUCG- -5'
10812 3' -53.6 NC_002794.1 + 5717 0.66 0.97915
Target:  5'- aCUAAgCGCGUCaaguuuacCGAgcCCGaGCAGCg -3'
miRNA:   3'- -GAUUgGCGCAGa-------GCUaaGGCgCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 180174 0.66 0.976833
Target:  5'- aUAGCCGUGggcgaUCGAcUCCacgaGCAGCa -3'
miRNA:   3'- gAUUGGCGCag---AGCUaAGGcg--CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 58877 0.66 0.976833
Target:  5'- -cAGCCGUG-Cgcg---CCGCGCAGCu -3'
miRNA:   3'- gaUUGGCGCaGagcuaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 113566 0.66 0.976833
Target:  5'- -gGACCgucuGCGUCUCGGcgUCCugcacgacgGCGCGGa -3'
miRNA:   3'- gaUUGG----CGCAGAGCUa-AGG---------CGCGUCg -5'
10812 3' -53.6 NC_002794.1 + 14658 0.66 0.976833
Target:  5'- --cGCCGCGgcgUCGG-UCCGacuCGCGGCg -3'
miRNA:   3'- gauUGGCGCag-AGCUaAGGC---GCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 138339 0.66 0.976833
Target:  5'- --cGCuCGCuUCUUGucUUCCGCGCgAGCg -3'
miRNA:   3'- gauUG-GCGcAGAGCu-AAGGCGCG-UCG- -5'
10812 3' -53.6 NC_002794.1 + 68906 0.66 0.976833
Target:  5'- -cGAUCGCGUCgCGGggCU-CGCGGCg -3'
miRNA:   3'- gaUUGGCGCAGaGCUaaGGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 123638 0.66 0.976833
Target:  5'- aUGAgCGCGUUcgggaugCGAaa-CGCGCAGCu -3'
miRNA:   3'- gAUUgGCGCAGa------GCUaagGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 32563 0.66 0.976833
Target:  5'- -cAGCCGCGgauag--UCgCGCGCGGCg -3'
miRNA:   3'- gaUUGGCGCagagcuaAG-GCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.