miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 3' -53.6 NC_002794.1 + 113795 0.66 0.976591
Target:  5'- -cGGgCGCGcUCUCGGUccucgccUUCGCgGCGGCg -3'
miRNA:   3'- gaUUgGCGC-AGAGCUA-------AGGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 63923 0.66 0.976102
Target:  5'- -cGACCGCcgcccggccggcgaGUCUCGAgUCCGaCGCcucGCc -3'
miRNA:   3'- gaUUGGCG--------------CAGAGCUaAGGC-GCGu--CG- -5'
10812 3' -53.6 NC_002794.1 + 102299 0.67 0.974332
Target:  5'- -cGGCCGgGUCuUCGGcUCCGaCGC-GCu -3'
miRNA:   3'- gaUUGGCgCAG-AGCUaAGGC-GCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 113009 0.67 0.974332
Target:  5'- -gAGCgaGCGcagCUUGccGUUCUGCGCGGCg -3'
miRNA:   3'- gaUUGg-CGCa--GAGC--UAAGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 12219 0.67 0.974332
Target:  5'- -cGGCgGCGUCggCGGcgCCG-GCGGCg -3'
miRNA:   3'- gaUUGgCGCAGa-GCUaaGGCgCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 14430 0.67 0.974332
Target:  5'- gUGGcCCGUGaucuUCUCGAUgcUCCGCG-GGCg -3'
miRNA:   3'- gAUU-GGCGC----AGAGCUA--AGGCGCgUCG- -5'
10812 3' -53.6 NC_002794.1 + 45727 0.67 0.974332
Target:  5'- -cAGCCcggGCGUCUCcacguaGCGCAGCg -3'
miRNA:   3'- gaUUGG---CGCAGAGcuaaggCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 80953 0.67 0.974332
Target:  5'- --uGCCGCGccaagCUCgGGUUCCGCGUcauccuGCc -3'
miRNA:   3'- gauUGGCGCa----GAG-CUAAGGCGCGu-----CG- -5'
10812 3' -53.6 NC_002794.1 + 17415 0.67 0.974332
Target:  5'- --cACCGCGgccaucgCGGUcUCCGCGCcGCc -3'
miRNA:   3'- gauUGGCGCaga----GCUA-AGGCGCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 96405 0.67 0.974332
Target:  5'- cCUuACCgGCGcuUCuUCGAUcUCgGCGCGGCg -3'
miRNA:   3'- -GAuUGG-CGC--AG-AGCUA-AGgCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 72282 0.67 0.973809
Target:  5'- -aAGCCGCGaaagcgggcgaUCGcgUCC-CGCAGCu -3'
miRNA:   3'- gaUUGGCGCag---------AGCuaAGGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 173745 0.67 0.973545
Target:  5'- --cAUCGUGUCUCGAUacgauaguaacaggUCCGCGUc-- -3'
miRNA:   3'- gauUGGCGCAGAGCUA--------------AGGCGCGucg -5'
10812 3' -53.6 NC_002794.1 + 190744 0.67 0.973278
Target:  5'- --cGCCGcCGUCUCGAcgggggcggcggCCGCGCGu- -3'
miRNA:   3'- gauUGGC-GCAGAGCUaa----------GGCGCGUcg -5'
10812 3' -53.6 NC_002794.1 + 59222 0.67 0.97164
Target:  5'- -cGGCCGCGgcgCgCGAgcucUUCGCGCuGCu -3'
miRNA:   3'- gaUUGGCGCa--GaGCUa---AGGCGCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 93787 0.67 0.97164
Target:  5'- gCUGGCgGCG-CUCGAgUCCcacgacaGCAGCu -3'
miRNA:   3'- -GAUUGgCGCaGAGCUaAGGcg-----CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 71768 0.67 0.968751
Target:  5'- -cGACCG-GUCcgCGccgUCGCGCGGCg -3'
miRNA:   3'- gaUUGGCgCAGa-GCuaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 138917 0.67 0.968751
Target:  5'- gCUGACCGCGg--CGGauggUCUGcCGguGCg -3'
miRNA:   3'- -GAUUGGCGCagaGCUa---AGGC-GCguCG- -5'
10812 3' -53.6 NC_002794.1 + 37418 0.67 0.968751
Target:  5'- -cAGCCG-GUCcagCGccgUCCGCaGCAGCa -3'
miRNA:   3'- gaUUGGCgCAGa--GCua-AGGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 13107 0.67 0.968751
Target:  5'- -gAGgUGCGUUcggCGGggucgCCGCGCGGCu -3'
miRNA:   3'- gaUUgGCGCAGa--GCUaa---GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 72002 0.67 0.968149
Target:  5'- --uACCGcCGgagCUCGAggaagccgaggUCGCGCAGCc -3'
miRNA:   3'- gauUGGC-GCa--GAGCUaa---------GGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.