miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 3' -53.6 NC_002794.1 + 5717 0.66 0.97915
Target:  5'- aCUAAgCGCGUCaaguuuacCGAgcCCGaGCAGCg -3'
miRNA:   3'- -GAUUgGCGCAGa-------GCUaaGGCgCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 8742 0.72 0.832491
Target:  5'- -gAGCgCGUGUCUCGGgcgugUCGCGaCGGCg -3'
miRNA:   3'- gaUUG-GCGCAGAGCUaa---GGCGC-GUCG- -5'
10812 3' -53.6 NC_002794.1 + 12219 0.67 0.974332
Target:  5'- -cGGCgGCGUCggCGGcgCCG-GCGGCg -3'
miRNA:   3'- gaUUGgCGCAGa-GCUaaGGCgCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 13107 0.67 0.968751
Target:  5'- -gAGgUGCGUUcggCGGggucgCCGCGCGGCu -3'
miRNA:   3'- gaUUgGCGCAGa--GCUaa---GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 14430 0.67 0.974332
Target:  5'- gUGGcCCGUGaucuUCUCGAUgcUCCGCG-GGCg -3'
miRNA:   3'- gAUU-GGCGC----AGAGCUA--AGGCGCgUCG- -5'
10812 3' -53.6 NC_002794.1 + 14479 0.71 0.848647
Target:  5'- --cGCCGCG-CUCGcugUUCGCgGCGGCg -3'
miRNA:   3'- gauUGGCGCaGAGCua-AGGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 14658 0.66 0.976833
Target:  5'- --cGCCGCGgcgUCGG-UCCGacuCGCGGCg -3'
miRNA:   3'- gauUGGCGCag-AGCUaAGGC---GCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 15276 0.72 0.798087
Target:  5'- -gAGCCGCGcggCUCcc-UCCGCGCgAGCg -3'
miRNA:   3'- gaUUGGCGCa--GAGcuaAGGCGCG-UCG- -5'
10812 3' -53.6 NC_002794.1 + 17415 0.67 0.974332
Target:  5'- --cACCGCGgccaucgCGGUcUCCGCGCcGCc -3'
miRNA:   3'- gauUGGCGCaga----GCUA-AGGCGCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 17486 0.68 0.955105
Target:  5'- --cGCCGCGUUUgCGAUcgCCGaCGcCGGCc -3'
miRNA:   3'- gauUGGCGCAGA-GCUAa-GGC-GC-GUCG- -5'
10812 3' -53.6 NC_002794.1 + 17627 0.67 0.965659
Target:  5'- --cGCCGCGgCgagCGAUcccgCCGCcGCGGCc -3'
miRNA:   3'- gauUGGCGCaGa--GCUAa---GGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 18214 0.66 0.984899
Target:  5'- cCUAACCGCcUCUCacacgcacuauuaGAaaagCgCGCGCGGCc -3'
miRNA:   3'- -GAUUGGCGcAGAG-------------CUaa--G-GCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 23702 0.66 0.986731
Target:  5'- -aGGCCccgaaGCGUCcCGAacCgCGCGCGGCg -3'
miRNA:   3'- gaUUGG-----CGCAGaGCUaaG-GCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 23947 0.69 0.933016
Target:  5'- -cGGCCGCGgcgcaCUUGGcUCCGagccaGCGGCg -3'
miRNA:   3'- gaUUGGCGCa----GAGCUaAGGCg----CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 32406 0.7 0.902599
Target:  5'- aCUuGCUGCGgugcagcacgaagCUgaGAUUCUGCGCGGCg -3'
miRNA:   3'- -GAuUGGCGCa------------GAg-CUAAGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 32563 0.66 0.976833
Target:  5'- -cAGCCGCGgauag--UCgCGCGCGGCg -3'
miRNA:   3'- gaUUGGCGCagagcuaAG-GCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 32814 0.66 0.983263
Target:  5'- -cGACCGuCGUCuUCGucggCCuCGCGGCc -3'
miRNA:   3'- gaUUGGC-GCAG-AGCuaa-GGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 36930 0.66 0.981291
Target:  5'- -cGACCGCGgaggaGAaagUCCGCGUcGCg -3'
miRNA:   3'- gaUUGGCGCagag-CUa--AGGCGCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 37418 0.67 0.968751
Target:  5'- -cAGCCG-GUCcagCGccgUCCGCaGCAGCa -3'
miRNA:   3'- gaUUGGCgCAGa--GCua-AGGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 37565 0.68 0.951147
Target:  5'- -cGACCGCGUCUCcgagCCGUcgaacagauaGCGGUc -3'
miRNA:   3'- gaUUGGCGCAGAGcuaaGGCG----------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.