miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 3' -53.6 NC_002794.1 + 40611 0.69 0.916961
Target:  5'- --cGCCgGCGUC-CGAcUCCGCGgAGUc -3'
miRNA:   3'- gauUGG-CGCAGaGCUaAGGCGCgUCG- -5'
10812 3' -53.6 NC_002794.1 + 43898 0.69 0.9279
Target:  5'- --cGCCgGCGUCUCGugaggagCgGCGCGGUc -3'
miRNA:   3'- gauUGG-CGCAGAGCuaa----GgCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 44030 0.68 0.958841
Target:  5'- -aGACCGuCGcUCUCcgcccccgGggUCCGCgGCAGCg -3'
miRNA:   3'- gaUUGGC-GC-AGAG--------CuaAGGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 44241 0.69 0.916961
Target:  5'- --uGCCGgGcggCUCGGUgCCGgGCGGCu -3'
miRNA:   3'- gauUGGCgCa--GAGCUAaGGCgCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 44753 0.66 0.985073
Target:  5'- -aGACgGCGaCUCGucgccgucCCGaCGCAGCg -3'
miRNA:   3'- gaUUGgCGCaGAGCuaa-----GGC-GCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 45727 0.67 0.974332
Target:  5'- -cAGCCcggGCGUCUCcacguaGCGCAGCg -3'
miRNA:   3'- gaUUGG---CGCAGAGcuaaggCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 48462 0.66 0.983263
Target:  5'- -cAGCCGCcacGUCagggCGAagccgCCGgGCAGCg -3'
miRNA:   3'- gaUUGGCG---CAGa---GCUaa---GGCgCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 48903 0.69 0.922548
Target:  5'- --uGCCGCaG-CUCGGggCCGCuccGCAGCg -3'
miRNA:   3'- gauUGGCG-CaGAGCUaaGGCG---CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 49024 0.67 0.962357
Target:  5'- -cGGCCGCGg--CGucgUCCGgCGCGGUc -3'
miRNA:   3'- gaUUGGCGCagaGCua-AGGC-GCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 49203 0.69 0.932515
Target:  5'- ---cCCGCGUCcagaaauUCGAggcgCCGCGCcGCc -3'
miRNA:   3'- gauuGGCGCAG-------AGCUaa--GGCGCGuCG- -5'
10812 3' -53.6 NC_002794.1 + 52633 0.7 0.878591
Target:  5'- --cGCCGCGUCgaaCGGgagCCGgaGCGGCg -3'
miRNA:   3'- gauUGGCGCAGa--GCUaa-GGCg-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 53903 0.67 0.962357
Target:  5'- -cGGCgGCGUcCUCGucgCCGUcgGCGGCg -3'
miRNA:   3'- gaUUGgCGCA-GAGCuaaGGCG--CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 53994 0.66 0.983263
Target:  5'- --cGCCaGCGUCUCcagcagcUCC-CGCAGCa -3'
miRNA:   3'- gauUGG-CGCAGAGcua----AGGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 54356 0.71 0.840662
Target:  5'- ---uCCGCGUCUCGAUggCCGUGaacauGCc -3'
miRNA:   3'- gauuGGCGCAGAGCUAa-GGCGCgu---CG- -5'
10812 3' -53.6 NC_002794.1 + 57916 0.71 0.859499
Target:  5'- -gGACCGCGUgcugcagaagCUCGAcuucgccgacgcgCUGCGCAGCc -3'
miRNA:   3'- gaUUGGCGCA----------GAGCUaa-----------GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 58315 0.66 0.981291
Target:  5'- --cGCCGCG-CUCugcacgCCGCGCGuGCu -3'
miRNA:   3'- gauUGGCGCaGAGcuaa--GGCGCGU-CG- -5'
10812 3' -53.6 NC_002794.1 + 58720 0.69 0.915239
Target:  5'- cCUGcACCGCGUCUCGcg-CCucagcgggcucaacGgGCAGCu -3'
miRNA:   3'- -GAU-UGGCGCAGAGCuaaGG--------------CgCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 58877 0.66 0.976833
Target:  5'- -cAGCCGUG-Cgcg---CCGCGCAGCu -3'
miRNA:   3'- gaUUGGCGCaGagcuaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 59148 0.69 0.9279
Target:  5'- -gGGCCGCGUCgcgcaCGAcacgCUgcugGCGCAGCu -3'
miRNA:   3'- gaUUGGCGCAGa----GCUaa--GG----CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 59222 0.67 0.97164
Target:  5'- -cGGCCGCGgcgCgCGAgcucUUCGCGCuGCu -3'
miRNA:   3'- gaUUGGCGCa--GaGCUa---AGGCGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.