miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 3' -53.6 NC_002794.1 + 195109 0.7 0.878591
Target:  5'- --uACgGCGUCUCGugcgCC-CGCGGCg -3'
miRNA:   3'- gauUGgCGCAGAGCuaa-GGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 194864 0.71 0.848647
Target:  5'- uCUGcCCGCGcCgcgCGAUgcacaggUCGCGCAGCu -3'
miRNA:   3'- -GAUuGGCGCaGa--GCUAa------GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 194725 0.69 0.922548
Target:  5'- --cGCCGCGUCaCGAacuccacgcaCCGCuGCAGCa -3'
miRNA:   3'- gauUGGCGCAGaGCUaa--------GGCG-CGUCG- -5'
10812 3' -53.6 NC_002794.1 + 190908 0.66 0.986731
Target:  5'- -aAACCGCGUCUgcucccacucccCGg--CC-CGCAGCc -3'
miRNA:   3'- gaUUGGCGCAGA------------GCuaaGGcGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 190744 0.67 0.973278
Target:  5'- --cGCCGcCGUCUCGAcgggggcggcggCCGCGCGu- -3'
miRNA:   3'- gauUGGC-GCAGAGCUaa----------GGCGCGUcg -5'
10812 3' -53.6 NC_002794.1 + 190681 0.66 0.982882
Target:  5'- --cGCCGgGUCUCcacgcacaccUCCcgGCGCAGCg -3'
miRNA:   3'- gauUGGCgCAGAGcua-------AGG--CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 190345 0.79 0.455994
Target:  5'- -gAACUGCGUCaggUCGucggCCGCGCGGCg -3'
miRNA:   3'- gaUUGGCGCAG---AGCuaa-GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 189832 0.69 0.911139
Target:  5'- -cAACCGCcacagcgggGUCUCGg--CCGCGgAGCc -3'
miRNA:   3'- gaUUGGCG---------CAGAGCuaaGGCGCgUCG- -5'
10812 3' -53.6 NC_002794.1 + 189067 0.66 0.97915
Target:  5'- --uACgGCGUCUCGgg-CCGC-CGGUa -3'
miRNA:   3'- gauUGgCGCAGAGCuaaGGCGcGUCG- -5'
10812 3' -53.6 NC_002794.1 + 187274 0.68 0.951147
Target:  5'- ----gCGCGUCUCGAacaCCGCGcCGGa -3'
miRNA:   3'- gauugGCGCAGAGCUaa-GGCGC-GUCg -5'
10812 3' -53.6 NC_002794.1 + 187001 0.66 0.981291
Target:  5'- -cGGCUGCGUCgucaGGUaCgGCGuCAGCg -3'
miRNA:   3'- gaUUGGCGCAGag--CUAaGgCGC-GUCG- -5'
10812 3' -53.6 NC_002794.1 + 186848 0.66 0.981291
Target:  5'- -cAGCgCGCGgg-CGcugCCGUGCAGCa -3'
miRNA:   3'- gaUUG-GCGCagaGCuaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 185495 0.69 0.9279
Target:  5'- -gGACCGCcuauauaUUCGAUcUCCGCGuCGGCg -3'
miRNA:   3'- gaUUGGCGca-----GAGCUA-AGGCGC-GUCG- -5'
10812 3' -53.6 NC_002794.1 + 185140 0.67 0.96337
Target:  5'- --cGCCGCGUCgagaagaucgccgaCGcgUCCuccgccgGCGCGGCg -3'
miRNA:   3'- gauUGGCGCAGa-------------GCuaAGG-------CGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 184950 0.68 0.955105
Target:  5'- -cAGCUGCG-C-CGGc-CCGCGCAGCc -3'
miRNA:   3'- gaUUGGCGCaGaGCUaaGGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 184825 0.77 0.571686
Target:  5'- -gGGCaCGCGUC-CGGgcgcaCCGCGCAGCg -3'
miRNA:   3'- gaUUG-GCGCAGaGCUaa---GGCGCGUCG- -5'
10812 3' -53.6 NC_002794.1 + 184140 0.71 0.871416
Target:  5'- -aGACCGUGgcgUUCGGaUCCGC-CGGCg -3'
miRNA:   3'- gaUUGGCGCa--GAGCUaAGGCGcGUCG- -5'
10812 3' -53.6 NC_002794.1 + 183982 0.66 0.985073
Target:  5'- --cACCGCGUC-CGccaCCGCGCccGCc -3'
miRNA:   3'- gauUGGCGCAGaGCuaaGGCGCGu-CG- -5'
10812 3' -53.6 NC_002794.1 + 181977 0.66 0.986731
Target:  5'- -gAACgGCGUCUCcg-UCgaGCGCAGa -3'
miRNA:   3'- gaUUGgCGCAGAGcuaAGg-CGCGUCg -5'
10812 3' -53.6 NC_002794.1 + 181204 0.66 0.985073
Target:  5'- -aGGCCGCgGUCU----UCCGaaaGCAGCg -3'
miRNA:   3'- gaUUGGCG-CAGAgcuaAGGCg--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.