Results 1 - 20 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10812 | 3' | -53.6 | NC_002794.1 | + | 120454 | 0.85 | 0.227948 |
Target: 5'- --cGCCGCGUCggccuggcUCGAUUUCGCGCGGCc -3' miRNA: 3'- gauUGGCGCAG--------AGCUAAGGCGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 44753 | 0.66 | 0.985073 |
Target: 5'- -aGACgGCGaCUCGucgccgucCCGaCGCAGCg -3' miRNA: 3'- gaUUGgCGCaGAGCuaa-----GGC-GCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 18214 | 0.66 | 0.984899 |
Target: 5'- cCUAACCGCcUCUCacacgcacuauuaGAaaagCgCGCGCGGCc -3' miRNA: 3'- -GAUUGGCGcAGAG-------------CUaa--G-GCGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 148535 | 0.66 | 0.983263 |
Target: 5'- gCUucCCGUGcCUCGucggcUgCGCGCGGCu -3' miRNA: 3'- -GAuuGGCGCaGAGCua---AgGCGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 106961 | 0.66 | 0.983263 |
Target: 5'- -aGACaCGCGUCgcc---UCGCGCGGCg -3' miRNA: 3'- gaUUG-GCGCAGagcuaaGGCGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 113235 | 0.66 | 0.983263 |
Target: 5'- -cGACCGcCGUCcagGAUcucCCGCuGCAGCg -3' miRNA: 3'- gaUUGGC-GCAGag-CUAa--GGCG-CGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 135707 | 0.66 | 0.983263 |
Target: 5'- -aGGuaGCG-CUCGAgcugCUGCGUAGCa -3' miRNA: 3'- gaUUggCGCaGAGCUaa--GGCGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 138570 | 0.66 | 0.983263 |
Target: 5'- ---uCCGuCGUCgcUCGAUcgaggcgcgUCgGCGCGGCg -3' miRNA: 3'- gauuGGC-GCAG--AGCUA---------AGgCGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 90678 | 0.66 | 0.983263 |
Target: 5'- -cGGCCGCGUggcugUUCGugugCC-CGCGGCa -3' miRNA: 3'- gaUUGGCGCA-----GAGCuaa-GGcGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 123196 | 0.66 | 0.985073 |
Target: 5'- -cGGCCGCGUCUCGGagauggacCUGUacaucgucucgaGCGGCc -3' miRNA: 3'- gaUUGGCGCAGAGCUaa------GGCG------------CGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 80673 | 0.66 | 0.985073 |
Target: 5'- -gGACC-CGUCaCGAggucuucaaCGCGCAGCu -3' miRNA: 3'- gaUUGGcGCAGaGCUaag------GCGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 135747 | 0.66 | 0.985073 |
Target: 5'- --cGCCGCGccCUCGAggaUCagGCGguGCu -3' miRNA: 3'- gauUGGCGCa-GAGCUa--AGg-CGCguCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 181977 | 0.66 | 0.986731 |
Target: 5'- -gAACgGCGUCUCcg-UCgaGCGCAGa -3' miRNA: 3'- gaUUGgCGCAGAGcuaAGg-CGCGUCg -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 23702 | 0.66 | 0.986731 |
Target: 5'- -aGGCCccgaaGCGUCcCGAacCgCGCGCGGCg -3' miRNA: 3'- gaUUGG-----CGCAGaGCUaaG-GCGCGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 82794 | 0.66 | 0.986731 |
Target: 5'- --cGCCGCGUCcacgCGcg-CCGCgacccGCGGCu -3' miRNA: 3'- gauUGGCGCAGa---GCuaaGGCG-----CGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 183982 | 0.66 | 0.985073 |
Target: 5'- --cACCGCGUC-CGccaCCGCGCccGCc -3' miRNA: 3'- gauUGGCGCAGaGCuaaGGCGCGu-CG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 127192 | 0.66 | 0.986731 |
Target: 5'- --cGCCGCGgC-CGcagCCGCaGCAGCa -3' miRNA: 3'- gauUGGCGCaGaGCuaaGGCG-CGUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 116221 | 0.66 | 0.986411 |
Target: 5'- -cGGCCGCGcggCUCGAgucgaugcccgCCGUGC-GCc -3' miRNA: 3'- gaUUGGCGCa--GAGCUaa---------GGCGCGuCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 126121 | 0.66 | 0.985073 |
Target: 5'- --cGCCGCG-CUCG--UCUGCGcCGGUu -3' miRNA: 3'- gauUGGCGCaGAGCuaAGGCGC-GUCG- -5' |
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10812 | 3' | -53.6 | NC_002794.1 | + | 181204 | 0.66 | 0.985073 |
Target: 5'- -aGGCCGCgGUCU----UCCGaaaGCAGCg -3' miRNA: 3'- gaUUGGCG-CAGAgcuaAGGCg--CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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