miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 5' -60.4 NC_002794.1 + 80742 0.66 0.84481
Target:  5'- uCCGCga-CgGGGUCCGGGccacGCG-CUCGg -3'
miRNA:   3'- -GGCGaggGgCCCAGGCUU----CGCuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 14999 0.66 0.84481
Target:  5'- -aGCUCCUCGGGcggUCuCGGcuGGCuGCUCGu -3'
miRNA:   3'- ggCGAGGGGCCC---AG-GCU--UCGcUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 46130 0.66 0.84481
Target:  5'- uCgGCUCCCCc-GUCCGAGuCGGCgUCGa -3'
miRNA:   3'- -GgCGAGGGGccCAGGCUUcGCUG-AGC- -5'
10812 5' -60.4 NC_002794.1 + 68717 0.66 0.842541
Target:  5'- cUCGCcccaCCCCGGGUCUucgaacacaccccgGAGGcCGACUg- -3'
miRNA:   3'- -GGCGa---GGGGCCCAGG--------------CUUC-GCUGAgc -5'
10812 5' -60.4 NC_002794.1 + 44289 0.66 0.837191
Target:  5'- uCCGCgcCCgCCGGG-CCGGcgaggcggggAGCGACcgCGa -3'
miRNA:   3'- -GGCGa-GG-GGCCCaGGCU----------UCGCUGa-GC- -5'
10812 5' -60.4 NC_002794.1 + 597 0.66 0.837191
Target:  5'- uCCGUUCguggCCGGGUgCGGucaGGCGGCcCGg -3'
miRNA:   3'- -GGCGAGg---GGCCCAgGCU---UCGCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 78422 0.66 0.829409
Target:  5'- uCCGCU-CCCGGcGUCaCGGucGCGGCggacgCGg -3'
miRNA:   3'- -GGCGAgGGGCC-CAG-GCUu-CGCUGa----GC- -5'
10812 5' -60.4 NC_002794.1 + 135456 0.66 0.829409
Target:  5'- -gGCUCCCgGGGcCCGcGGcCGACg-- -3'
miRNA:   3'- ggCGAGGGgCCCaGGCuUC-GCUGagc -5'
10812 5' -60.4 NC_002794.1 + 67045 0.66 0.829409
Target:  5'- gUCGCggaCCCGGcGUCCGuGGGCucCUCGc -3'
miRNA:   3'- -GGCGag-GGGCC-CAGGC-UUCGcuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 87318 0.66 0.829409
Target:  5'- gCGgUCCCCaGGUCCaGcGGCGGCa-- -3'
miRNA:   3'- gGCgAGGGGcCCAGG-CuUCGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 132189 0.66 0.829409
Target:  5'- aCGCUCCgaCUGGGggaCGGGuGCGACgUCGa -3'
miRNA:   3'- gGCGAGG--GGCCCag-GCUU-CGCUG-AGC- -5'
10812 5' -60.4 NC_002794.1 + 105504 0.66 0.828622
Target:  5'- gCCGCcgCCgCCGGucgcgccGUCCGAAGCgGACg-- -3'
miRNA:   3'- -GGCGa-GG-GGCC-------CAGGCUUCG-CUGagc -5'
10812 5' -60.4 NC_002794.1 + 148062 0.66 0.82147
Target:  5'- uCCGCgCUCUGGGagCCGgGAGUGGcCUCGa -3'
miRNA:   3'- -GGCGaGGGGCCCa-GGC-UUCGCU-GAGC- -5'
10812 5' -60.4 NC_002794.1 + 47949 0.66 0.82147
Target:  5'- gCCGCgcgUCCCGGcG-CCGGcugGGCGAC-CGc -3'
miRNA:   3'- -GGCGa--GGGGCC-CaGGCU---UCGCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 187908 0.66 0.82147
Target:  5'- gCCGCUCgCCCgccGGGccCCGccGCGAC-CGu -3'
miRNA:   3'- -GGCGAG-GGG---CCCa-GGCuuCGCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 74371 0.66 0.82147
Target:  5'- gCCGUgCUUCGGGggcggCCGgcGCGACUa- -3'
miRNA:   3'- -GGCGaGGGGCCCa----GGCuuCGCUGAgc -5'
10812 5' -60.4 NC_002794.1 + 11870 0.66 0.820667
Target:  5'- aCCGCccgCCCCgcgacGGGUCCucGAGCGgguucguGCUCGc -3'
miRNA:   3'- -GGCGa--GGGG-----CCCAGGc-UUCGC-------UGAGC- -5'
10812 5' -60.4 NC_002794.1 + 150583 0.66 0.813379
Target:  5'- cCUGC-CCUCGGGcgcCCGAGGaCGGC-CGg -3'
miRNA:   3'- -GGCGaGGGGCCCa--GGCUUC-GCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 114500 0.66 0.813379
Target:  5'- aCGCgCgCCGGaccGUcCCGGAGCGAgUCGa -3'
miRNA:   3'- gGCGaGgGGCC---CA-GGCUUCGCUgAGC- -5'
10812 5' -60.4 NC_002794.1 + 69356 0.66 0.805145
Target:  5'- cUCGUUCCCCGcGGagaUCgGgcGCGACgaagCGa -3'
miRNA:   3'- -GGCGAGGGGC-CC---AGgCuuCGCUGa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.