miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 5' -60.4 NC_002794.1 + 67268 1.09 0.001965
Target:  5'- cCCGCUCCCCGGGUCCGAAGCGACUCGc -3'
miRNA:   3'- -GGCGAGGGGCCCAGGCUUCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 1332 0.79 0.197395
Target:  5'- uCC-CUCCCCGGGUCCGAAGaGACg-- -3'
miRNA:   3'- -GGcGAGGGGCCCAGGCUUCgCUGagc -5'
10812 5' -60.4 NC_002794.1 + 13331 0.79 0.206782
Target:  5'- aCCGCUCCCCcGGUCgGggGUGGCggCGc -3'
miRNA:   3'- -GGCGAGGGGcCCAGgCuuCGCUGa-GC- -5'
10812 5' -60.4 NC_002794.1 + 130288 0.77 0.27752
Target:  5'- gCCGCUCgcuCCCGGGUCCGGaacGGCGAgaUGu -3'
miRNA:   3'- -GGCGAG---GGGCCCAGGCU---UCGCUgaGC- -5'
10812 5' -60.4 NC_002794.1 + 179900 0.76 0.283694
Target:  5'- aCG-UCUCCGGGaaUCCGGAGCGGCUCc -3'
miRNA:   3'- gGCgAGGGGCCC--AGGCUUCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 53357 0.76 0.289976
Target:  5'- aCGUcaacUCCgCCGGGUCCccgucGAGCGACUCGa -3'
miRNA:   3'- gGCG----AGG-GGCCCAGGc----UUCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 114825 0.75 0.337004
Target:  5'- gCGCUCUCCGGcGgCCGAGuCGGCUCGg -3'
miRNA:   3'- gGCGAGGGGCC-CaGGCUUcGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 181874 0.75 0.366274
Target:  5'- uCCGCUgCCCCgGGGUCgCGAacaGGCGACagcgCGg -3'
miRNA:   3'- -GGCGA-GGGG-CCCAG-GCU---UCGCUGa---GC- -5'
10812 5' -60.4 NC_002794.1 + 44042 0.74 0.381553
Target:  5'- uCCGC-CCCCgGGGUCCGcggcAGCGACa-- -3'
miRNA:   3'- -GGCGaGGGG-CCCAGGCu---UCGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 113982 0.73 0.420734
Target:  5'- gCCGCUCCUCGagcagccguucgaGGcgCCGGaggAGCGACUCGu -3'
miRNA:   3'- -GGCGAGGGGC-------------CCa-GGCU---UCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 117025 0.73 0.446742
Target:  5'- gCCGCgccaCCCCGGGUCCGAcAGC-ACg-- -3'
miRNA:   3'- -GGCGa---GGGGCCCAGGCU-UCGcUGagc -5'
10812 5' -60.4 NC_002794.1 + 66524 0.73 0.463989
Target:  5'- gCCG-UCCCCGGGUCCGcgaAGGuCGGCgccggCGg -3'
miRNA:   3'- -GGCgAGGGGCCCAGGC---UUC-GCUGa----GC- -5'
10812 5' -60.4 NC_002794.1 + 87028 0.72 0.481577
Target:  5'- uCCGCaggaUCCGGGgaCCGgcGCGGCUCGg -3'
miRNA:   3'- -GGCGag--GGGCCCa-GGCuuCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 110282 0.72 0.51676
Target:  5'- gCCGCcgUCCUCGGGcCCGAgagccgcGGgGACUCu -3'
miRNA:   3'- -GGCG--AGGGGCCCaGGCU-------UCgCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 106717 0.72 0.517676
Target:  5'- aCUGC-CCCCGGGUCCGAGaguucaacGUG-CUCc -3'
miRNA:   3'- -GGCGaGGGGCCCAGGCUU--------CGCuGAGc -5'
10812 5' -60.4 NC_002794.1 + 112298 0.72 0.517676
Target:  5'- gCgGCcCCCCGGGUCCGAcuucGGCGcCgacggCGg -3'
miRNA:   3'- -GgCGaGGGGCCCAGGCU----UCGCuGa----GC- -5'
10812 5' -60.4 NC_002794.1 + 115607 0.71 0.526872
Target:  5'- cCCGCUCgCCCGGcG-CCGGgaGGCGGgUCa -3'
miRNA:   3'- -GGCGAG-GGGCC-CaGGCU--UCGCUgAGc -5'
10812 5' -60.4 NC_002794.1 + 13477 0.71 0.554806
Target:  5'- aCCGCUCCCCccaGcGUCCGcuuGCGGCUg- -3'
miRNA:   3'- -GGCGAGGGGc--C-CAGGCuu-CGCUGAgc -5'
10812 5' -60.4 NC_002794.1 + 2270 0.71 0.554806
Target:  5'- aCCGCcggCCCuuauaCGGGagCCGggGCGugUCa -3'
miRNA:   3'- -GGCGa--GGG-----GCCCa-GGCuuCGCugAGc -5'
10812 5' -60.4 NC_002794.1 + 107035 0.7 0.583158
Target:  5'- gCCGCUggggacCCCCGcGUCgGAGGCGGCgggcgCGg -3'
miRNA:   3'- -GGCGA------GGGGCcCAGgCUUCGCUGa----GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.