miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 5' -60.4 NC_002794.1 + 101266 0.7 0.602223
Target:  5'- gCCGC-CCCCGGcG-CCGGuGGCGGCggCGg -3'
miRNA:   3'- -GGCGaGGGGCC-CaGGCU-UCGCUGa-GC- -5'
10812 5' -60.4 NC_002794.1 + 43338 0.7 0.602223
Target:  5'- aCGCagCgCCGGuugaaGUCCGAGuGCGGCUCGg -3'
miRNA:   3'- gGCGa-GgGGCC-----CAGGCUU-CGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 84837 0.7 0.611788
Target:  5'- uCCGCUccucaCCCCGGG-CUGu-GUGGCUCa -3'
miRNA:   3'- -GGCGA-----GGGGCCCaGGCuuCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 99204 0.7 0.621366
Target:  5'- cCCGC-CCCCGuacgCCGAGcGCGAUUCGu -3'
miRNA:   3'- -GGCGaGGGGCcca-GGCUU-CGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 144861 0.7 0.629992
Target:  5'- gCUGCUCCacacguuucugacUCGGGUgCGggGCGagacGCUCGc -3'
miRNA:   3'- -GGCGAGG-------------GGCCCAgGCuuCGC----UGAGC- -5'
10812 5' -60.4 NC_002794.1 + 44402 0.69 0.650117
Target:  5'- cCCGUUCCggucugaccggCCGGcG-CCG-AGCGGCUCGa -3'
miRNA:   3'- -GGCGAGG-----------GGCC-CaGGCuUCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 114325 0.69 0.650117
Target:  5'- gCGCUCCUCGuagucccgCCGcAGCGGCUCGu -3'
miRNA:   3'- gGCGAGGGGCcca-----GGCuUCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 78992 0.69 0.659685
Target:  5'- gCCGCU-CCCGGaGU-CGcGGCGACUCc -3'
miRNA:   3'- -GGCGAgGGGCC-CAgGCuUCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 134700 0.69 0.669233
Target:  5'- aCCGC-CUCUGGGggCCGGAGUugcgGGCUCu -3'
miRNA:   3'- -GGCGaGGGGCCCa-GGCUUCG----CUGAGc -5'
10812 5' -60.4 NC_002794.1 + 61149 0.69 0.677804
Target:  5'- gCCGCccgaCCCCGagcgcgcGGUCCGGaucGGCGGCUgGu -3'
miRNA:   3'- -GGCGa---GGGGC-------CCAGGCU---UCGCUGAgC- -5'
10812 5' -60.4 NC_002794.1 + 22682 0.69 0.677804
Target:  5'- uUCGCUUCCCGGGUCCcuacGAGagaaaaacaaaacGCGGCg-- -3'
miRNA:   3'- -GGCGAGGGGCCCAGG----CUU-------------CGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 130662 0.69 0.678754
Target:  5'- gCCGCcggCCgCGGGcUCCGccGCGGcCUCGu -3'
miRNA:   3'- -GGCGa--GGgGCCC-AGGCuuCGCU-GAGC- -5'
10812 5' -60.4 NC_002794.1 + 55333 0.69 0.688243
Target:  5'- uCCGaggaCCCGGGgucgcgcCCGAGGCGGC-CGa -3'
miRNA:   3'- -GGCgag-GGGCCCa------GGCUUCGCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 145596 0.68 0.716432
Target:  5'- gCCgGCUCCCgCGGaGUCgGgcGCGACg-- -3'
miRNA:   3'- -GG-CGAGGG-GCC-CAGgCuuCGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 135591 0.68 0.716432
Target:  5'- gUCGCcggggUCCgUCGGGUCgGAAGCGGaUCGg -3'
miRNA:   3'- -GGCG-----AGG-GGCCCAGgCUUCGCUgAGC- -5'
10812 5' -60.4 NC_002794.1 + 107339 0.68 0.734922
Target:  5'- uUCGgUCCgUGGGUCCGGucgccgcgAGCGAuCUCc -3'
miRNA:   3'- -GGCgAGGgGCCCAGGCU--------UCGCU-GAGc -5'
10812 5' -60.4 NC_002794.1 + 37134 0.68 0.734922
Target:  5'- -aGCUCCgCCGGGUCgaGGGCGcaGCUCc -3'
miRNA:   3'- ggCGAGG-GGCCCAGgcUUCGC--UGAGc -5'
10812 5' -60.4 NC_002794.1 + 116063 0.67 0.753099
Target:  5'- gCGCgaCUgGGGUCgCGGAGCG-CUCGg -3'
miRNA:   3'- gGCGagGGgCCCAG-GCUUCGCuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 179425 0.67 0.753099
Target:  5'- cCCGggCCCCGGGcgCgGAGGCGuggaccaccgcCUCGg -3'
miRNA:   3'- -GGCgaGGGGCCCa-GgCUUCGCu----------GAGC- -5'
10812 5' -60.4 NC_002794.1 + 90971 0.67 0.759375
Target:  5'- cCCGCUUCggcguggccucguaCCGGG-CCGAGGCGGagCGg -3'
miRNA:   3'- -GGCGAGG--------------GGCCCaGGCUUCGCUgaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.