miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 5' -60.4 NC_002794.1 + 69356 0.66 0.805145
Target:  5'- cUCGUUCCCCGcGGagaUCgGgcGCGACgaagCGa -3'
miRNA:   3'- -GGCGAGGGGC-CC---AGgCuuCGCUGa---GC- -5'
10812 5' -60.4 NC_002794.1 + 182015 0.66 0.805145
Target:  5'- cCCgGgaCCCCGGcGUCCGGgccgccGGCGAC-Ca -3'
miRNA:   3'- -GG-CgaGGGGCC-CAGGCU------UCGCUGaGc -5'
10812 5' -60.4 NC_002794.1 + 63579 0.67 0.796772
Target:  5'- uCCGC-CCCCGGGaggUGAAGCuccuccgcaccgGACUCu -3'
miRNA:   3'- -GGCGaGGGGCCCag-GCUUCG------------CUGAGc -5'
10812 5' -60.4 NC_002794.1 + 123761 0.67 0.788269
Target:  5'- gCCGCUUCCCGGGcguggacgccUCCguguugGAGGCGGuggcgccgUUCGg -3'
miRNA:   3'- -GGCGAGGGGCCC----------AGG------CUUCGCU--------GAGC- -5'
10812 5' -60.4 NC_002794.1 + 113054 0.67 0.787412
Target:  5'- gCGCgCCUCGaGGUCCcgcagguacuccuGGAGCGcCUCGg -3'
miRNA:   3'- gGCGaGGGGC-CCAGG-------------CUUCGCuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 180687 0.67 0.787412
Target:  5'- gCCGCU-CCCGGcGcCCGGcgGGCGgaccaugGCUCGg -3'
miRNA:   3'- -GGCGAgGGGCC-CaGGCU--UCGC-------UGAGC- -5'
10812 5' -60.4 NC_002794.1 + 154357 0.67 0.779643
Target:  5'- -aGCUCCCgCGcGGUCCaGGccgcGGCGGCggCGg -3'
miRNA:   3'- ggCGAGGG-GC-CCAGG-CU----UCGCUGa-GC- -5'
10812 5' -60.4 NC_002794.1 + 16531 0.67 0.779643
Target:  5'- aCCGCcgUCCCCGGcGUCCccGGCG--UCGc -3'
miRNA:   3'- -GGCG--AGGGGCC-CAGGcuUCGCugAGC- -5'
10812 5' -60.4 NC_002794.1 + 110386 0.67 0.779643
Target:  5'- gCCGCUCCUCG--UCCGAGGaCucCUCGg -3'
miRNA:   3'- -GGCGAGGGGCccAGGCUUC-GcuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 56528 0.67 0.770901
Target:  5'- gCGCUCguUCCGGucgccaUCCGGAGCG-CUCGc -3'
miRNA:   3'- gGCGAG--GGGCCc-----AGGCUUCGCuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 32686 0.67 0.770901
Target:  5'- aCCGUcCUCCGGaGgcgUCGcGGGCGACUCGc -3'
miRNA:   3'- -GGCGaGGGGCC-Ca--GGC-UUCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 112436 0.67 0.765603
Target:  5'- aCGCgaagaCCCGGagaucccggcgcagcGUCCGGuAGCGGCUCu -3'
miRNA:   3'- gGCGag---GGGCC---------------CAGGCU-UCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 87343 0.67 0.762051
Target:  5'- -gGUUCCCCagcagcGGGUCCGGcggcgAGCGGCg-- -3'
miRNA:   3'- ggCGAGGGG------CCCAGGCU-----UCGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 181000 0.67 0.762051
Target:  5'- cUCGuCUCCuCCGaGGcgaagcucgucUCCGAAGCGaaGCUCGu -3'
miRNA:   3'- -GGC-GAGG-GGC-CC-----------AGGCUUCGC--UGAGC- -5'
10812 5' -60.4 NC_002794.1 + 40452 0.67 0.76116
Target:  5'- -aGCgaugCCCCGGGcgCUGucccuucGGGCGGCUCa -3'
miRNA:   3'- ggCGa---GGGGCCCa-GGC-------UUCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 90971 0.67 0.759375
Target:  5'- cCCGCUUCggcguggccucguaCCGGG-CCGAGGCGGagCGg -3'
miRNA:   3'- -GGCGAGG--------------GGCCCaGGCUUCGCUgaGC- -5'
10812 5' -60.4 NC_002794.1 + 116063 0.67 0.753099
Target:  5'- gCGCgaCUgGGGUCgCGGAGCG-CUCGg -3'
miRNA:   3'- gGCGagGGgCCCAG-GCUUCGCuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 179425 0.67 0.753099
Target:  5'- cCCGggCCCCGGGcgCgGAGGCGuggaccaccgcCUCGg -3'
miRNA:   3'- -GGCgaGGGGCCCa-GgCUUCGCu----------GAGC- -5'
10812 5' -60.4 NC_002794.1 + 107339 0.68 0.734922
Target:  5'- uUCGgUCCgUGGGUCCGGucgccgcgAGCGAuCUCc -3'
miRNA:   3'- -GGCgAGGgGCCCAGGCU--------UCGCU-GAGc -5'
10812 5' -60.4 NC_002794.1 + 37134 0.68 0.734922
Target:  5'- -aGCUCCgCCGGGUCgaGGGCGcaGCUCc -3'
miRNA:   3'- ggCGAGG-GGCCCAGgcUUCGC--UGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.