Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10812 | 5' | -60.4 | NC_002794.1 | + | 145596 | 0.68 | 0.716432 |
Target: 5'- gCCgGCUCCCgCGGaGUCgGgcGCGACg-- -3' miRNA: 3'- -GG-CGAGGG-GCC-CAGgCuuCGCUGagc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 135591 | 0.68 | 0.716432 |
Target: 5'- gUCGCcggggUCCgUCGGGUCgGAAGCGGaUCGg -3' miRNA: 3'- -GGCG-----AGG-GGCCCAGgCUUCGCUgAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 55333 | 0.69 | 0.688243 |
Target: 5'- uCCGaggaCCCGGGgucgcgcCCGAGGCGGC-CGa -3' miRNA: 3'- -GGCgag-GGGCCCa------GGCUUCGCUGaGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 130662 | 0.69 | 0.678754 |
Target: 5'- gCCGCcggCCgCGGGcUCCGccGCGGcCUCGu -3' miRNA: 3'- -GGCGa--GGgGCCC-AGGCuuCGCU-GAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 61149 | 0.69 | 0.677804 |
Target: 5'- gCCGCccgaCCCCGagcgcgcGGUCCGGaucGGCGGCUgGu -3' miRNA: 3'- -GGCGa---GGGGC-------CCAGGCU---UCGCUGAgC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 22682 | 0.69 | 0.677804 |
Target: 5'- uUCGCUUCCCGGGUCCcuacGAGagaaaaacaaaacGCGGCg-- -3' miRNA: 3'- -GGCGAGGGGCCCAGG----CUU-------------CGCUGagc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 134700 | 0.69 | 0.669233 |
Target: 5'- aCCGC-CUCUGGGggCCGGAGUugcgGGCUCu -3' miRNA: 3'- -GGCGaGGGGCCCa-GGCUUCG----CUGAGc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 78992 | 0.69 | 0.659685 |
Target: 5'- gCCGCU-CCCGGaGU-CGcGGCGACUCc -3' miRNA: 3'- -GGCGAgGGGCC-CAgGCuUCGCUGAGc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 44402 | 0.69 | 0.650117 |
Target: 5'- cCCGUUCCggucugaccggCCGGcG-CCG-AGCGGCUCGa -3' miRNA: 3'- -GGCGAGG-----------GGCC-CaGGCuUCGCUGAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 114325 | 0.69 | 0.650117 |
Target: 5'- gCGCUCCUCGuagucccgCCGcAGCGGCUCGu -3' miRNA: 3'- gGCGAGGGGCcca-----GGCuUCGCUGAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 144861 | 0.7 | 0.629992 |
Target: 5'- gCUGCUCCacacguuucugacUCGGGUgCGggGCGagacGCUCGc -3' miRNA: 3'- -GGCGAGG-------------GGCCCAgGCuuCGC----UGAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 99204 | 0.7 | 0.621366 |
Target: 5'- cCCGC-CCCCGuacgCCGAGcGCGAUUCGu -3' miRNA: 3'- -GGCGaGGGGCcca-GGCUU-CGCUGAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 84837 | 0.7 | 0.611788 |
Target: 5'- uCCGCUccucaCCCCGGG-CUGu-GUGGCUCa -3' miRNA: 3'- -GGCGA-----GGGGCCCaGGCuuCGCUGAGc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 101266 | 0.7 | 0.602223 |
Target: 5'- gCCGC-CCCCGGcG-CCGGuGGCGGCggCGg -3' miRNA: 3'- -GGCGaGGGGCC-CaGGCU-UCGCUGa-GC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 43338 | 0.7 | 0.602223 |
Target: 5'- aCGCagCgCCGGuugaaGUCCGAGuGCGGCUCGg -3' miRNA: 3'- gGCGa-GgGGCC-----CAGGCUU-CGCUGAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 107035 | 0.7 | 0.583158 |
Target: 5'- gCCGCUggggacCCCCGcGUCgGAGGCGGCgggcgCGg -3' miRNA: 3'- -GGCGA------GGGGCcCAGgCUUCGCUGa----GC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 13477 | 0.71 | 0.554806 |
Target: 5'- aCCGCUCCCCccaGcGUCCGcuuGCGGCUg- -3' miRNA: 3'- -GGCGAGGGGc--C-CAGGCuu-CGCUGAgc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 2270 | 0.71 | 0.554806 |
Target: 5'- aCCGCcggCCCuuauaCGGGagCCGggGCGugUCa -3' miRNA: 3'- -GGCGa--GGG-----GCCCa-GGCuuCGCugAGc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 115607 | 0.71 | 0.526872 |
Target: 5'- cCCGCUCgCCCGGcG-CCGGgaGGCGGgUCa -3' miRNA: 3'- -GGCGAG-GGGCC-CaGGCU--UCGCUgAGc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 106717 | 0.72 | 0.517676 |
Target: 5'- aCUGC-CCCCGGGUCCGAGaguucaacGUG-CUCc -3' miRNA: 3'- -GGCGaGGGGCCCAGGCUU--------CGCuGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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