miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 5' -60.4 NC_002794.1 + 597 0.66 0.837191
Target:  5'- uCCGUUCguggCCGGGUgCGGucaGGCGGCcCGg -3'
miRNA:   3'- -GGCGAGg---GGCCCAgGCU---UCGCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 1332 0.79 0.197395
Target:  5'- uCC-CUCCCCGGGUCCGAAGaGACg-- -3'
miRNA:   3'- -GGcGAGGGGCCCAGGCUUCgCUGagc -5'
10812 5' -60.4 NC_002794.1 + 2270 0.71 0.554806
Target:  5'- aCCGCcggCCCuuauaCGGGagCCGggGCGugUCa -3'
miRNA:   3'- -GGCGa--GGG-----GCCCa-GGCuuCGCugAGc -5'
10812 5' -60.4 NC_002794.1 + 11870 0.66 0.820667
Target:  5'- aCCGCccgCCCCgcgacGGGUCCucGAGCGgguucguGCUCGc -3'
miRNA:   3'- -GGCGa--GGGG-----CCCAGGc-UUCGC-------UGAGC- -5'
10812 5' -60.4 NC_002794.1 + 13331 0.79 0.206782
Target:  5'- aCCGCUCCCCcGGUCgGggGUGGCggCGc -3'
miRNA:   3'- -GGCGAGGGGcCCAGgCuuCGCUGa-GC- -5'
10812 5' -60.4 NC_002794.1 + 13477 0.71 0.554806
Target:  5'- aCCGCUCCCCccaGcGUCCGcuuGCGGCUg- -3'
miRNA:   3'- -GGCGAGGGGc--C-CAGGCuu-CGCUGAgc -5'
10812 5' -60.4 NC_002794.1 + 14999 0.66 0.84481
Target:  5'- -aGCUCCUCGGGcggUCuCGGcuGGCuGCUCGu -3'
miRNA:   3'- ggCGAGGGGCCC---AG-GCU--UCGcUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 16531 0.67 0.779643
Target:  5'- aCCGCcgUCCCCGGcGUCCccGGCG--UCGc -3'
miRNA:   3'- -GGCG--AGGGGCC-CAGGcuUCGCugAGC- -5'
10812 5' -60.4 NC_002794.1 + 22682 0.69 0.677804
Target:  5'- uUCGCUUCCCGGGUCCcuacGAGagaaaaacaaaacGCGGCg-- -3'
miRNA:   3'- -GGCGAGGGGCCCAGG----CUU-------------CGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 32686 0.67 0.770901
Target:  5'- aCCGUcCUCCGGaGgcgUCGcGGGCGACUCGc -3'
miRNA:   3'- -GGCGaGGGGCC-Ca--GGC-UUCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 37134 0.68 0.734922
Target:  5'- -aGCUCCgCCGGGUCgaGGGCGcaGCUCc -3'
miRNA:   3'- ggCGAGG-GGCCCAGgcUUCGC--UGAGc -5'
10812 5' -60.4 NC_002794.1 + 40452 0.67 0.76116
Target:  5'- -aGCgaugCCCCGGGcgCUGucccuucGGGCGGCUCa -3'
miRNA:   3'- ggCGa---GGGGCCCa-GGC-------UUCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 43338 0.7 0.602223
Target:  5'- aCGCagCgCCGGuugaaGUCCGAGuGCGGCUCGg -3'
miRNA:   3'- gGCGa-GgGGCC-----CAGGCUU-CGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 44042 0.74 0.381553
Target:  5'- uCCGC-CCCCgGGGUCCGcggcAGCGACa-- -3'
miRNA:   3'- -GGCGaGGGG-CCCAGGCu---UCGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 44289 0.66 0.837191
Target:  5'- uCCGCgcCCgCCGGG-CCGGcgaggcggggAGCGACcgCGa -3'
miRNA:   3'- -GGCGa-GG-GGCCCaGGCU----------UCGCUGa-GC- -5'
10812 5' -60.4 NC_002794.1 + 44402 0.69 0.650117
Target:  5'- cCCGUUCCggucugaccggCCGGcG-CCG-AGCGGCUCGa -3'
miRNA:   3'- -GGCGAGG-----------GGCC-CaGGCuUCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 45839 0.66 0.805145
Target:  5'- -aGCUCCCCGucGUacgCGgcGCGGCUCa -3'
miRNA:   3'- ggCGAGGGGCc-CAg--GCuuCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 46130 0.66 0.84481
Target:  5'- uCgGCUCCCCc-GUCCGAGuCGGCgUCGa -3'
miRNA:   3'- -GgCGAGGGGccCAGGCUUcGCUG-AGC- -5'
10812 5' -60.4 NC_002794.1 + 47949 0.66 0.82147
Target:  5'- gCCGCgcgUCCCGGcG-CCGGcugGGCGAC-CGc -3'
miRNA:   3'- -GGCGa--GGGGCC-CaGGCU---UCGCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 53357 0.76 0.289976
Target:  5'- aCGUcaacUCCgCCGGGUCCccgucGAGCGACUCGa -3'
miRNA:   3'- gGCG----AGG-GGCCCAGGc----UUCGCUGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.