miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 5' -60.4 NC_002794.1 + 55333 0.69 0.688243
Target:  5'- uCCGaggaCCCGGGgucgcgcCCGAGGCGGC-CGa -3'
miRNA:   3'- -GGCgag-GGGCCCa------GGCUUCGCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 56528 0.67 0.770901
Target:  5'- gCGCUCguUCCGGucgccaUCCGGAGCG-CUCGc -3'
miRNA:   3'- gGCGAG--GGGCCc-----AGGCUUCGCuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 61149 0.69 0.677804
Target:  5'- gCCGCccgaCCCCGagcgcgcGGUCCGGaucGGCGGCUgGu -3'
miRNA:   3'- -GGCGa---GGGGC-------CCAGGCU---UCGCUGAgC- -5'
10812 5' -60.4 NC_002794.1 + 63579 0.67 0.796772
Target:  5'- uCCGC-CCCCGGGaggUGAAGCuccuccgcaccgGACUCu -3'
miRNA:   3'- -GGCGaGGGGCCCag-GCUUCG------------CUGAGc -5'
10812 5' -60.4 NC_002794.1 + 66524 0.73 0.463989
Target:  5'- gCCG-UCCCCGGGUCCGcgaAGGuCGGCgccggCGg -3'
miRNA:   3'- -GGCgAGGGGCCCAGGC---UUC-GCUGa----GC- -5'
10812 5' -60.4 NC_002794.1 + 67045 0.66 0.829409
Target:  5'- gUCGCggaCCCGGcGUCCGuGGGCucCUCGc -3'
miRNA:   3'- -GGCGag-GGGCC-CAGGC-UUCGcuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 67268 1.09 0.001965
Target:  5'- cCCGCUCCCCGGGUCCGAAGCGACUCGc -3'
miRNA:   3'- -GGCGAGGGGCCCAGGCUUCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 68717 0.66 0.842541
Target:  5'- cUCGCcccaCCCCGGGUCUucgaacacaccccgGAGGcCGACUg- -3'
miRNA:   3'- -GGCGa---GGGGCCCAGG--------------CUUC-GCUGAgc -5'
10812 5' -60.4 NC_002794.1 + 69356 0.66 0.805145
Target:  5'- cUCGUUCCCCGcGGagaUCgGgcGCGACgaagCGa -3'
miRNA:   3'- -GGCGAGGGGC-CC---AGgCuuCGCUGa---GC- -5'
10812 5' -60.4 NC_002794.1 + 74371 0.66 0.82147
Target:  5'- gCCGUgCUUCGGGggcggCCGgcGCGACUa- -3'
miRNA:   3'- -GGCGaGGGGCCCa----GGCuuCGCUGAgc -5'
10812 5' -60.4 NC_002794.1 + 78422 0.66 0.829409
Target:  5'- uCCGCU-CCCGGcGUCaCGGucGCGGCggacgCGg -3'
miRNA:   3'- -GGCGAgGGGCC-CAG-GCUu-CGCUGa----GC- -5'
10812 5' -60.4 NC_002794.1 + 78992 0.69 0.659685
Target:  5'- gCCGCU-CCCGGaGU-CGcGGCGACUCc -3'
miRNA:   3'- -GGCGAgGGGCC-CAgGCuUCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 80742 0.66 0.84481
Target:  5'- uCCGCga-CgGGGUCCGGGccacGCG-CUCGg -3'
miRNA:   3'- -GGCGaggGgCCCAGGCUU----CGCuGAGC- -5'
10812 5' -60.4 NC_002794.1 + 84837 0.7 0.611788
Target:  5'- uCCGCUccucaCCCCGGG-CUGu-GUGGCUCa -3'
miRNA:   3'- -GGCGA-----GGGGCCCaGGCuuCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 87028 0.72 0.481577
Target:  5'- uCCGCaggaUCCGGGgaCCGgcGCGGCUCGg -3'
miRNA:   3'- -GGCGag--GGGCCCa-GGCuuCGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 87318 0.66 0.829409
Target:  5'- gCGgUCCCCaGGUCCaGcGGCGGCa-- -3'
miRNA:   3'- gGCgAGGGGcCCAGG-CuUCGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 87343 0.67 0.762051
Target:  5'- -gGUUCCCCagcagcGGGUCCGGcggcgAGCGGCg-- -3'
miRNA:   3'- ggCGAGGGG------CCCAGGCU-----UCGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 90971 0.67 0.759375
Target:  5'- cCCGCUUCggcguggccucguaCCGGG-CCGAGGCGGagCGg -3'
miRNA:   3'- -GGCGAGG--------------GGCCCaGGCUUCGCUgaGC- -5'
10812 5' -60.4 NC_002794.1 + 99204 0.7 0.621366
Target:  5'- cCCGC-CCCCGuacgCCGAGcGCGAUUCGu -3'
miRNA:   3'- -GGCGaGGGGCcca-GGCUU-CGCUGAGC- -5'
10812 5' -60.4 NC_002794.1 + 101266 0.7 0.602223
Target:  5'- gCCGC-CCCCGGcG-CCGGuGGCGGCggCGg -3'
miRNA:   3'- -GGCGaGGGGCC-CaGGCU-UCGCUGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.