miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10812 5' -60.4 NC_002794.1 + 187908 0.66 0.82147
Target:  5'- gCCGCUCgCCCgccGGGccCCGccGCGAC-CGu -3'
miRNA:   3'- -GGCGAG-GGG---CCCa-GGCuuCGCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 182015 0.66 0.805145
Target:  5'- cCCgGgaCCCCGGcGUCCGGgccgccGGCGAC-Ca -3'
miRNA:   3'- -GG-CgaGGGGCC-CAGGCU------UCGCUGaGc -5'
10812 5' -60.4 NC_002794.1 + 181874 0.75 0.366274
Target:  5'- uCCGCUgCCCCgGGGUCgCGAacaGGCGACagcgCGg -3'
miRNA:   3'- -GGCGA-GGGG-CCCAG-GCU---UCGCUGa---GC- -5'
10812 5' -60.4 NC_002794.1 + 181000 0.67 0.762051
Target:  5'- cUCGuCUCCuCCGaGGcgaagcucgucUCCGAAGCGaaGCUCGu -3'
miRNA:   3'- -GGC-GAGG-GGC-CC-----------AGGCUUCGC--UGAGC- -5'
10812 5' -60.4 NC_002794.1 + 180687 0.67 0.787412
Target:  5'- gCCGCU-CCCGGcGcCCGGcgGGCGgaccaugGCUCGg -3'
miRNA:   3'- -GGCGAgGGGCC-CaGGCU--UCGC-------UGAGC- -5'
10812 5' -60.4 NC_002794.1 + 179900 0.76 0.283694
Target:  5'- aCG-UCUCCGGGaaUCCGGAGCGGCUCc -3'
miRNA:   3'- gGCgAGGGGCCC--AGGCUUCGCUGAGc -5'
10812 5' -60.4 NC_002794.1 + 179425 0.67 0.753099
Target:  5'- cCCGggCCCCGGGcgCgGAGGCGuggaccaccgcCUCGg -3'
miRNA:   3'- -GGCgaGGGGCCCa-GgCUUCGCu----------GAGC- -5'
10812 5' -60.4 NC_002794.1 + 154357 0.67 0.779643
Target:  5'- -aGCUCCCgCGcGGUCCaGGccgcGGCGGCggCGg -3'
miRNA:   3'- ggCGAGGG-GC-CCAGG-CU----UCGCUGa-GC- -5'
10812 5' -60.4 NC_002794.1 + 150583 0.66 0.813379
Target:  5'- cCUGC-CCUCGGGcgcCCGAGGaCGGC-CGg -3'
miRNA:   3'- -GGCGaGGGGCCCa--GGCUUC-GCUGaGC- -5'
10812 5' -60.4 NC_002794.1 + 148062 0.66 0.82147
Target:  5'- uCCGCgCUCUGGGagCCGgGAGUGGcCUCGa -3'
miRNA:   3'- -GGCGaGGGGCCCa-GGC-UUCGCU-GAGC- -5'
10812 5' -60.4 NC_002794.1 + 145596 0.68 0.716432
Target:  5'- gCCgGCUCCCgCGGaGUCgGgcGCGACg-- -3'
miRNA:   3'- -GG-CGAGGG-GCC-CAGgCuuCGCUGagc -5'
10812 5' -60.4 NC_002794.1 + 144861 0.7 0.629992
Target:  5'- gCUGCUCCacacguuucugacUCGGGUgCGggGCGagacGCUCGc -3'
miRNA:   3'- -GGCGAGG-------------GGCCCAgGCuuCGC----UGAGC- -5'
10812 5' -60.4 NC_002794.1 + 135591 0.68 0.716432
Target:  5'- gUCGCcggggUCCgUCGGGUCgGAAGCGGaUCGg -3'
miRNA:   3'- -GGCG-----AGG-GGCCCAGgCUUCGCUgAGC- -5'
10812 5' -60.4 NC_002794.1 + 135456 0.66 0.829409
Target:  5'- -gGCUCCCgGGGcCCGcGGcCGACg-- -3'
miRNA:   3'- ggCGAGGGgCCCaGGCuUC-GCUGagc -5'
10812 5' -60.4 NC_002794.1 + 134700 0.69 0.669233
Target:  5'- aCCGC-CUCUGGGggCCGGAGUugcgGGCUCu -3'
miRNA:   3'- -GGCGaGGGGCCCa-GGCUUCG----CUGAGc -5'
10812 5' -60.4 NC_002794.1 + 132189 0.66 0.829409
Target:  5'- aCGCUCCgaCUGGGggaCGGGuGCGACgUCGa -3'
miRNA:   3'- gGCGAGG--GGCCCag-GCUU-CGCUG-AGC- -5'
10812 5' -60.4 NC_002794.1 + 130662 0.69 0.678754
Target:  5'- gCCGCcggCCgCGGGcUCCGccGCGGcCUCGu -3'
miRNA:   3'- -GGCGa--GGgGCCC-AGGCuuCGCU-GAGC- -5'
10812 5' -60.4 NC_002794.1 + 130288 0.77 0.27752
Target:  5'- gCCGCUCgcuCCCGGGUCCGGaacGGCGAgaUGu -3'
miRNA:   3'- -GGCGAG---GGGCCCAGGCU---UCGCUgaGC- -5'
10812 5' -60.4 NC_002794.1 + 123761 0.67 0.788269
Target:  5'- gCCGCUUCCCGGGcguggacgccUCCguguugGAGGCGGuggcgccgUUCGg -3'
miRNA:   3'- -GGCGAGGGGCCC----------AGG------CUUCGCU--------GAGC- -5'
10812 5' -60.4 NC_002794.1 + 117025 0.73 0.446742
Target:  5'- gCCGCgccaCCCCGGGUCCGAcAGC-ACg-- -3'
miRNA:   3'- -GGCGa---GGGGCCCAGGCU-UCGcUGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.