Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10812 | 5' | -60.4 | NC_002794.1 | + | 67268 | 1.09 | 0.001965 |
Target: 5'- cCCGCUCCCCGGGUCCGAAGCGACUCGc -3' miRNA: 3'- -GGCGAGGGGCCCAGGCUUCGCUGAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 105504 | 0.66 | 0.828622 |
Target: 5'- gCCGCcgCCgCCGGucgcgccGUCCGAAGCgGACg-- -3' miRNA: 3'- -GGCGa-GG-GGCC-------CAGGCUUCG-CUGagc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 187908 | 0.66 | 0.82147 |
Target: 5'- gCCGCUCgCCCgccGGGccCCGccGCGAC-CGu -3' miRNA: 3'- -GGCGAG-GGG---CCCa-GGCuuCGCUGaGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 47949 | 0.66 | 0.82147 |
Target: 5'- gCCGCgcgUCCCGGcG-CCGGcugGGCGAC-CGc -3' miRNA: 3'- -GGCGa--GGGGCC-CaGGCU---UCGCUGaGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 148062 | 0.66 | 0.82147 |
Target: 5'- uCCGCgCUCUGGGagCCGgGAGUGGcCUCGa -3' miRNA: 3'- -GGCGaGGGGCCCa-GGC-UUCGCU-GAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 11870 | 0.66 | 0.820667 |
Target: 5'- aCCGCccgCCCCgcgacGGGUCCucGAGCGgguucguGCUCGc -3' miRNA: 3'- -GGCGa--GGGG-----CCCAGGc-UUCGC-------UGAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 150583 | 0.66 | 0.813379 |
Target: 5'- cCUGC-CCUCGGGcgcCCGAGGaCGGC-CGg -3' miRNA: 3'- -GGCGaGGGGCCCa--GGCUUC-GCUGaGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 45839 | 0.66 | 0.805145 |
Target: 5'- -aGCUCCCCGucGUacgCGgcGCGGCUCa -3' miRNA: 3'- ggCGAGGGGCc-CAg--GCuuCGCUGAGc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 69356 | 0.66 | 0.805145 |
Target: 5'- cUCGUUCCCCGcGGagaUCgGgcGCGACgaagCGa -3' miRNA: 3'- -GGCGAGGGGC-CC---AGgCuuCGCUGa---GC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 74371 | 0.66 | 0.82147 |
Target: 5'- gCCGUgCUUCGGGggcggCCGgcGCGACUa- -3' miRNA: 3'- -GGCGaGGGGCCCa----GGCuuCGCUGAgc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 78422 | 0.66 | 0.829409 |
Target: 5'- uCCGCU-CCCGGcGUCaCGGucGCGGCggacgCGg -3' miRNA: 3'- -GGCGAgGGGCC-CAG-GCUu-CGCUGa----GC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 135456 | 0.66 | 0.829409 |
Target: 5'- -gGCUCCCgGGGcCCGcGGcCGACg-- -3' miRNA: 3'- ggCGAGGGgCCCaGGCuUC-GCUGagc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 14999 | 0.66 | 0.84481 |
Target: 5'- -aGCUCCUCGGGcggUCuCGGcuGGCuGCUCGu -3' miRNA: 3'- ggCGAGGGGCCC---AG-GCU--UCGcUGAGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 46130 | 0.66 | 0.84481 |
Target: 5'- uCgGCUCCCCc-GUCCGAGuCGGCgUCGa -3' miRNA: 3'- -GgCGAGGGGccCAGGCUUcGCUG-AGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 44289 | 0.66 | 0.837191 |
Target: 5'- uCCGCgcCCgCCGGG-CCGGcgaggcggggAGCGACcgCGa -3' miRNA: 3'- -GGCGa-GG-GGCCCaGGCU----------UCGCUGa-GC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 68717 | 0.66 | 0.842541 |
Target: 5'- cUCGCcccaCCCCGGGUCUucgaacacaccccgGAGGcCGACUg- -3' miRNA: 3'- -GGCGa---GGGGCCCAGG--------------CUUC-GCUGAgc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 597 | 0.66 | 0.837191 |
Target: 5'- uCCGUUCguggCCGGGUgCGGucaGGCGGCcCGg -3' miRNA: 3'- -GGCGAGg---GGCCCAgGCU---UCGCUGaGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 132189 | 0.66 | 0.829409 |
Target: 5'- aCGCUCCgaCUGGGggaCGGGuGCGACgUCGa -3' miRNA: 3'- gGCGAGG--GGCCCag-GCUU-CGCUG-AGC- -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 87318 | 0.66 | 0.829409 |
Target: 5'- gCGgUCCCCaGGUCCaGcGGCGGCa-- -3' miRNA: 3'- gGCgAGGGGcCCAGG-CuUCGCUGagc -5' |
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10812 | 5' | -60.4 | NC_002794.1 | + | 67045 | 0.66 | 0.829409 |
Target: 5'- gUCGCggaCCCGGcGUCCGuGGGCucCUCGc -3' miRNA: 3'- -GGCGag-GGGCC-CAGGC-UUCGcuGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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