miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10813 3' -59.2 NC_002794.1 + 66567 0.66 0.871413
Target:  5'- aCGGUAUCGcCgGCGc-CGGCGGCa-- -3'
miRNA:   3'- cGCCAUAGCaG-CGCucGCCGCCGcag -5'
10813 3' -59.2 NC_002794.1 + 55313 0.66 0.871413
Target:  5'- cGCGG---CGggCGCGGGCGGCuuccgaggacccGGgGUCg -3'
miRNA:   3'- -CGCCauaGCa-GCGCUCGCCG------------CCgCAG- -5'
10813 3' -59.2 NC_002794.1 + 184046 0.66 0.871413
Target:  5'- aGCGcgcg-GUCGCGGGCcGCGGCGa- -3'
miRNA:   3'- -CGCcauagCAGCGCUCGcCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 152640 0.66 0.871413
Target:  5'- gGCGG---CGUU-CGAGCGGCGaGaCGUCg -3'
miRNA:   3'- -CGCCauaGCAGcGCUCGCCGC-C-GCAG- -5'
10813 3' -59.2 NC_002794.1 + 87354 0.66 0.871413
Target:  5'- aGCGGgucCGgcgGCGAGCGGCguucugGGCGg- -3'
miRNA:   3'- -CGCCauaGCag-CGCUCGCCG------CCGCag -5'
10813 3' -59.2 NC_002794.1 + 61876 0.66 0.871413
Target:  5'- cGCGccGUCGUCggcgccgcgcgGCGAGCG-CGGCGa- -3'
miRNA:   3'- -CGCcaUAGCAG-----------CGCUCGCcGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 145227 0.66 0.871413
Target:  5'- cGUGGUGUCGgaggCGCGcgcgcuGCGGaaGCGg- -3'
miRNA:   3'- -CGCCAUAGCa---GCGCu-----CGCCgcCGCag -5'
10813 3' -59.2 NC_002794.1 + 53257 0.66 0.864325
Target:  5'- cCGGcGUCGccgCGCGAcaacGgGGCGGCGa- -3'
miRNA:   3'- cGCCaUAGCa--GCGCU----CgCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 139457 0.66 0.864325
Target:  5'- uCGGcagGUCGUCGUGcgccaGGaCGGUGGUGUa -3'
miRNA:   3'- cGCCa--UAGCAGCGC-----UC-GCCGCCGCAg -5'
10813 3' -59.2 NC_002794.1 + 94279 0.66 0.864325
Target:  5'- cGCGGcg-CGgcccgaGCGGGgGGCGGC-UCg -3'
miRNA:   3'- -CGCCauaGCag----CGCUCgCCGCCGcAG- -5'
10813 3' -59.2 NC_002794.1 + 190747 0.66 0.864325
Target:  5'- cGCcGUcUCGaCGgGGGCGGCGGCcgcgcGUCc -3'
miRNA:   3'- -CGcCAuAGCaGCgCUCGCCGCCG-----CAG- -5'
10813 3' -59.2 NC_002794.1 + 37507 0.66 0.864325
Target:  5'- cGCGcGUGUgGUCGCGcAGCaccacgucccGGCuGGCGa- -3'
miRNA:   3'- -CGC-CAUAgCAGCGC-UCG----------CCG-CCGCag -5'
10813 3' -59.2 NC_002794.1 + 142939 0.66 0.857047
Target:  5'- aGCaGGUGgcCGagGgGaAGuCGGCGGCGUCg -3'
miRNA:   3'- -CG-CCAUa-GCagCgC-UC-GCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 64800 0.66 0.857047
Target:  5'- cGCGGcgagcgaCGcCGCGGaCGGCGGCGa- -3'
miRNA:   3'- -CGCCaua----GCaGCGCUcGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 556 0.66 0.857047
Target:  5'- cCGGccUCGgCGCG-GCGGUGGCagGUCu -3'
miRNA:   3'- cGCCauAGCaGCGCuCGCCGCCG--CAG- -5'
10813 3' -59.2 NC_002794.1 + 101009 0.66 0.856309
Target:  5'- cGCGGgccuuccUGUCGggggaCGCGGGCcgGGCGcGgGUCg -3'
miRNA:   3'- -CGCC-------AUAGCa----GCGCUCG--CCGC-CgCAG- -5'
10813 3' -59.2 NC_002794.1 + 193591 0.66 0.849585
Target:  5'- gGCGGcucacCGUCGUGuAGCGuaccGCGGCGcCg -3'
miRNA:   3'- -CGCCaua--GCAGCGC-UCGC----CGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 120976 0.66 0.849585
Target:  5'- cCGGccugCGaguUCGUGuAGCGGCGGCGg- -3'
miRNA:   3'- cGCCaua-GC---AGCGC-UCGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 119433 0.66 0.849585
Target:  5'- cGCaGGUccgacggCGgcgGCG-GUGGCGGCGUCg -3'
miRNA:   3'- -CG-CCAua-----GCag-CGCuCGCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 100443 0.66 0.849585
Target:  5'- uCGaGUGUCugaGCG-GCGGCGGCGcCu -3'
miRNA:   3'- cGC-CAUAGcagCGCuCGCCGCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.