miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10813 3' -59.2 NC_002794.1 + 65948 1.1 0.001824
Target:  5'- gGCGGUAUCGUCGCGAGCGGCGGCGUCu -3'
miRNA:   3'- -CGCCAUAGCAGCGCUCGCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 116931 0.82 0.141615
Target:  5'- cCGGcGUCGUCgGCGuccccGGCGGCGGCGUCg -3'
miRNA:   3'- cGCCaUAGCAG-CGC-----UCGCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 113160 0.81 0.156152
Target:  5'- aGCGuGUAgcgCG-CGCGGGCGGCGGCGgUCg -3'
miRNA:   3'- -CGC-CAUa--GCaGCGCUCGCCGCCGC-AG- -5'
10813 3' -59.2 NC_002794.1 + 96601 0.79 0.223283
Target:  5'- aCGGUccgcucuuUCuGUaCGCGGGCGGCGGCGUCu -3'
miRNA:   3'- cGCCAu-------AG-CA-GCGCUCGCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 55281 0.78 0.262283
Target:  5'- gGCGGUggCGgCGaCGAgggcgGCGGCGGCGUCg -3'
miRNA:   3'- -CGCCAuaGCaGC-GCU-----CGCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 92255 0.77 0.29341
Target:  5'- gGCGG---CGUCGCuGGCGGCGGCGcCg -3'
miRNA:   3'- -CGCCauaGCAGCGcUCGCCGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 44539 0.76 0.313432
Target:  5'- cGCGccGUcGUCGUCGCcGGCGGCGGCGcCc -3'
miRNA:   3'- -CGC--CA-UAGCAGCGcUCGCCGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 41262 0.76 0.320333
Target:  5'- gGCGGcccGUCGUCGCGcuccgagaacGGCGGCGGC-UCc -3'
miRNA:   3'- -CGCCa--UAGCAGCGC----------UCGCCGCCGcAG- -5'
10813 3' -59.2 NC_002794.1 + 138122 0.76 0.340983
Target:  5'- cGUGGUGcUCGUCGCcggucucGGGCGGCGGUuUCu -3'
miRNA:   3'- -CGCCAU-AGCAGCG-------CUCGCCGCCGcAG- -5'
10813 3' -59.2 NC_002794.1 + 89804 0.75 0.356528
Target:  5'- aCGGgAUCGUCGCGuGUGGgGuGCGUCc -3'
miRNA:   3'- cGCCaUAGCAGCGCuCGCCgC-CGCAG- -5'
10813 3' -59.2 NC_002794.1 + 65920 0.75 0.371789
Target:  5'- ----cGUCGUCGCcggcGGCGGUGGCGUCg -3'
miRNA:   3'- cgccaUAGCAGCGc---UCGCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 32567 0.75 0.379585
Target:  5'- cGCGGaua-GUCGCGcGCGGCGGUGcCg -3'
miRNA:   3'- -CGCCauagCAGCGCuCGCCGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 53881 0.75 0.379585
Target:  5'- gGCGGacuccUCGUCGgGAcucCGGCGGCGUCc -3'
miRNA:   3'- -CGCCau---AGCAGCgCUc--GCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 129066 0.74 0.395501
Target:  5'- aCGGUGU-GUCGCGgcuGGCGGCGGacCGUCc -3'
miRNA:   3'- cGCCAUAgCAGCGC---UCGCCGCC--GCAG- -5'
10813 3' -59.2 NC_002794.1 + 82042 0.74 0.395501
Target:  5'- cGUGGg--CGgcgGCG-GCGGCGGCGUCg -3'
miRNA:   3'- -CGCCauaGCag-CGCuCGCCGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 65250 0.74 0.411843
Target:  5'- gGCGGcgAUCcggccUCGcCGAGCGGCGGCGcCu -3'
miRNA:   3'- -CGCCa-UAGc----AGC-GCUCGCCGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 123436 0.74 0.411843
Target:  5'- gGCGGUGacCGUCGcCGAGCGGCuGGCc-- -3'
miRNA:   3'- -CGCCAUa-GCAGC-GCUCGCCG-CCGcag -5'
10813 3' -59.2 NC_002794.1 + 112745 0.74 0.420168
Target:  5'- cGCGGUGcUC--CGCG-GCGGCGGgGUCg -3'
miRNA:   3'- -CGCCAU-AGcaGCGCuCGCCGCCgCAG- -5'
10813 3' -59.2 NC_002794.1 + 110619 0.74 0.420168
Target:  5'- aGCGGgagccgcggCGcCGCG-GCGGCGGgGUCg -3'
miRNA:   3'- -CGCCaua------GCaGCGCuCGCCGCCgCAG- -5'
10813 3' -59.2 NC_002794.1 + 146824 0.73 0.472165
Target:  5'- cGCGGUcgcuGUCGUuuggCGCGAGaguCGGUGcGCGUCg -3'
miRNA:   3'- -CGCCA----UAGCA----GCGCUC---GCCGC-CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.