miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10813 3' -59.2 NC_002794.1 + 137594 0.66 0.847311
Target:  5'- uGCGGggagccgccgccggCgGUCGCG-GCGGCGGUGcCc -3'
miRNA:   3'- -CGCCaua-----------G-CAGCGCuCGCCGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 75049 0.66 0.841944
Target:  5'- cCGGU-UCGauUCGCGAcCGaCGGCGUCg -3'
miRNA:   3'- cGCCAuAGC--AGCGCUcGCcGCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 189842 0.66 0.841944
Target:  5'- aGCGGggucUCGgcCGCgGAGCcGuCGGCGUCg -3'
miRNA:   3'- -CGCCau--AGCa-GCG-CUCGcC-GCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 126379 0.66 0.841944
Target:  5'- cGUGGg--CGcCGgGGccugcGCGGCGGCGUg -3'
miRNA:   3'- -CGCCauaGCaGCgCU-----CGCCGCCGCAg -5'
10813 3' -59.2 NC_002794.1 + 104449 0.66 0.841944
Target:  5'- cGCGGg--CGgCcCGAGCccgGGCGGCGUg -3'
miRNA:   3'- -CGCCauaGCaGcGCUCG---CCGCCGCAg -5'
10813 3' -59.2 NC_002794.1 + 49412 0.66 0.834129
Target:  5'- gGCGGccgCG--GCG-GCGGCGGcCGUCa -3'
miRNA:   3'- -CGCCauaGCagCGCuCGCCGCC-GCAG- -5'
10813 3' -59.2 NC_002794.1 + 18528 0.66 0.834129
Target:  5'- cGCGGccgCGaaCGCGAGCacgagcacGGCGGCGa- -3'
miRNA:   3'- -CGCCauaGCa-GCGCUCG--------CCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 139601 0.67 0.826953
Target:  5'- cGCGGUAaCGgucgaccgagaucagCGCGA-CGGUGGCGa- -3'
miRNA:   3'- -CGCCAUaGCa--------------GCGCUcGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 129931 0.67 0.826148
Target:  5'- -aGGc--CGUgGCGAcgGCGGCGGCGg- -3'
miRNA:   3'- cgCCauaGCAgCGCU--CGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 109156 0.67 0.826148
Target:  5'- gGCGGgggagAUgG-CGaCGAGCGGCGGUa-- -3'
miRNA:   3'- -CGCCa----UAgCaGC-GCUCGCCGCCGcag -5'
10813 3' -59.2 NC_002794.1 + 182333 0.67 0.826148
Target:  5'- gGCGGg--CGg-GCGAGCGGacgGGCGg- -3'
miRNA:   3'- -CGCCauaGCagCGCUCGCCg--CCGCag -5'
10813 3' -59.2 NC_002794.1 + 142194 0.67 0.826148
Target:  5'- aGCGGcagUG-CGgGaAGCGGCGGCGg- -3'
miRNA:   3'- -CGCCauaGCaGCgC-UCGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 191669 0.67 0.826148
Target:  5'- aCGGcgcCGgcaGCG-GCGGCGGCGUg -3'
miRNA:   3'- cGCCauaGCag-CGCuCGCCGCCGCAg -5'
10813 3' -59.2 NC_002794.1 + 144979 0.67 0.826148
Target:  5'- aCGGU---GUCGCGAcCGGCgccgGGCGUCc -3'
miRNA:   3'- cGCCAuagCAGCGCUcGCCG----CCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 184571 0.67 0.826148
Target:  5'- cGCGc---CGcCGCG-GCGGCGGCGg- -3'
miRNA:   3'- -CGCcauaGCaGCGCuCGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 107068 0.67 0.826148
Target:  5'- cGCGGcgccgccggcaUGUCGgagcCGaCGGGCGGgGGUGUg -3'
miRNA:   3'- -CGCC-----------AUAGCa---GC-GCUCGCCgCCGCAg -5'
10813 3' -59.2 NC_002794.1 + 14472 0.67 0.818007
Target:  5'- aGCGGcg-CGcCGCGcucgcuguucGCGGCGGCGg- -3'
miRNA:   3'- -CGCCauaGCaGCGCu---------CGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 125524 0.67 0.818007
Target:  5'- aCGGc--CGUCGCGGcgaacgagcGCGGCGGCa-- -3'
miRNA:   3'- cGCCauaGCAGCGCU---------CGCCGCCGcag -5'
10813 3' -59.2 NC_002794.1 + 89397 0.67 0.818007
Target:  5'- cGCGGUGagGUcCGUgGAGCGcCGGCGcCa -3'
miRNA:   3'- -CGCCAUagCA-GCG-CUCGCcGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 129265 0.67 0.818007
Target:  5'- aGCGcc-UCGUCGUGAGCGGgcCGGUcUCu -3'
miRNA:   3'- -CGCcauAGCAGCGCUCGCC--GCCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.