miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10813 3' -59.2 NC_002794.1 + 556 0.66 0.857047
Target:  5'- cCGGccUCGgCGCG-GCGGUGGCagGUCu -3'
miRNA:   3'- cGCCauAGCaGCGCuCGCCGCCG--CAG- -5'
10813 3' -59.2 NC_002794.1 + 10612 0.68 0.751651
Target:  5'- aGCGGUuagcucGUCGUCaacaugccacgggcgGgGAGCGGCGcgagcccgacgaGCGUCu -3'
miRNA:   3'- -CGCCA------UAGCAG---------------CgCUCGCCGC------------CGCAG- -5'
10813 3' -59.2 NC_002794.1 + 12220 0.72 0.546112
Target:  5'- gGCGGcGUCGgcggCGCcGGCGGCGcCGUCc -3'
miRNA:   3'- -CGCCaUAGCa---GCGcUCGCCGCcGCAG- -5'
10813 3' -59.2 NC_002794.1 + 14472 0.67 0.818007
Target:  5'- aGCGGcg-CGcCGCGcucgcuguucGCGGCGGCGg- -3'
miRNA:   3'- -CGCCauaGCaGCGCu---------CGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 14661 0.72 0.527217
Target:  5'- cGCGGcGUCgGUC-CGAcucGCGGCGGCGgUCg -3'
miRNA:   3'- -CGCCaUAG-CAGcGCU---CGCCGCCGC-AG- -5'
10813 3' -59.2 NC_002794.1 + 18332 0.68 0.756223
Target:  5'- uGUGGUugugCGUCGCGAuccggGCGGagaaugugucuacCGGCGUUu -3'
miRNA:   3'- -CGCCAua--GCAGCGCU-----CGCC-------------GCCGCAG- -5'
10813 3' -59.2 NC_002794.1 + 18528 0.66 0.834129
Target:  5'- cGCGGccgCGaaCGCGAGCacgagcacGGCGGCGa- -3'
miRNA:   3'- -CGCCauaGCa-GCGCUCG--------CCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 19452 0.68 0.775145
Target:  5'- aGCGGgcaCGa-GCG-GCGGCGGCGg- -3'
miRNA:   3'- -CGCCauaGCagCGCuCGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 21898 0.69 0.672044
Target:  5'- cGCGGccugCGUCGguGGUGGCGGCGg- -3'
miRNA:   3'- -CGCCaua-GCAGCgcUCGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 23366 0.7 0.62337
Target:  5'- cGCGGgccgaGUCGaaCGUGaAGCGGCGGaUGUCg -3'
miRNA:   3'- -CGCCa----UAGCa-GCGC-UCGCCGCC-GCAG- -5'
10813 3' -59.2 NC_002794.1 + 32567 0.75 0.379585
Target:  5'- cGCGGaua-GUCGCGcGCGGCGGUGcCg -3'
miRNA:   3'- -CGCCauagCAGCGCuCGCCGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 32854 0.71 0.574837
Target:  5'- aGCGGcagCGgccgagccgGCGGGCGGCGGCGg- -3'
miRNA:   3'- -CGCCauaGCag-------CGCUCGCCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 34859 0.67 0.801271
Target:  5'- aGCGGg--CGcCGCGGGCGccGCGGaCGcCg -3'
miRNA:   3'- -CGCCauaGCaGCGCUCGC--CGCC-GCaG- -5'
10813 3' -59.2 NC_002794.1 + 35986 0.72 0.527217
Target:  5'- cGCGGacccgguuuUAUUGUCGCGGGgcucgGGCGGCGg- -3'
miRNA:   3'- -CGCC---------AUAGCAGCGCUCg----CCGCCGCag -5'
10813 3' -59.2 NC_002794.1 + 36389 0.71 0.574837
Target:  5'- aGCGGUcgacccagaaAUCGacCGCGuAGCGGCGGCu-- -3'
miRNA:   3'- -CGCCA----------UAGCa-GCGC-UCGCCGCCGcag -5'
10813 3' -59.2 NC_002794.1 + 36934 0.71 0.595151
Target:  5'- cGCGGaggagaaaguccgCGUCGCGcGGCGGCaGGCaGUCg -3'
miRNA:   3'- -CGCCaua----------GCAGCGC-UCGCCG-CCG-CAG- -5'
10813 3' -59.2 NC_002794.1 + 37272 0.72 0.517862
Target:  5'- gGCGGg--CG-CGCGGGC-GCGGCGUa -3'
miRNA:   3'- -CGCCauaGCaGCGCUCGcCGCCGCAg -5'
10813 3' -59.2 NC_002794.1 + 37507 0.66 0.864325
Target:  5'- cGCGcGUGUgGUCGCGcAGCaccacgucccGGCuGGCGa- -3'
miRNA:   3'- -CGC-CAUAgCAGCGC-UCG----------CCG-CCGCag -5'
10813 3' -59.2 NC_002794.1 + 37734 0.73 0.490211
Target:  5'- aGCGGcggCGcCGCcGGCGGCGGCG-Cg -3'
miRNA:   3'- -CGCCauaGCaGCGcUCGCCGCCGCaG- -5'
10813 3' -59.2 NC_002794.1 + 37869 0.7 0.652612
Target:  5'- cCGGUcggCGUCuCGGGCGGCGGgGg- -3'
miRNA:   3'- cGCCAua-GCAGcGCUCGCCGCCgCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.