miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10813 5' -53.8 NC_002794.1 + 17124 0.66 0.988093
Target:  5'- uCCGACgGUCGAagccgGCgaaacGGCGGUaGcgCCCg -3'
miRNA:   3'- -GGUUG-CAGCU-----UGac---CCGCCA-CuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 43452 0.66 0.987656
Target:  5'- gCGAUGUCGAAgUGGcugaccuugcacucGUGGUugaggaagcgGAUCCCc -3'
miRNA:   3'- gGUUGCAGCUUgACC--------------CGCCA----------CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 14662 0.66 0.986588
Target:  5'- gCGGCGUCGGuccgACUcGcGGCGGcGGUCgCg -3'
miRNA:   3'- gGUUGCAGCU----UGA-C-CCGCCaCUAGgG- -5'
10813 5' -53.8 NC_002794.1 + 150645 0.66 0.98494
Target:  5'- cCCGgcacgcGCGUCGAcCUGGGCuGg---CCCg -3'
miRNA:   3'- -GGU------UGCAGCUuGACCCGcCacuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 10882 0.66 0.983143
Target:  5'- aCCGACGaCGGGC-GGGCGGaGGuguuUCgCCa -3'
miRNA:   3'- -GGUUGCaGCUUGaCCCGCCaCU----AG-GG- -5'
10813 5' -53.8 NC_002794.1 + 142962 0.66 0.983143
Target:  5'- gCGGCGUCGAGCUccucgucgagGGGCuGcGUG--CCCg -3'
miRNA:   3'- gGUUGCAGCUUGA----------CCCG-C-CACuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 56038 0.66 0.981188
Target:  5'- gCAGCGgcagaaGAGCgUGGGCaGGUGGaagUUCCa -3'
miRNA:   3'- gGUUGCag----CUUG-ACCCG-CCACU---AGGG- -5'
10813 5' -53.8 NC_002794.1 + 138720 0.66 0.981188
Target:  5'- aCUcGCGUCGAGCcGGcucgaCGG-GGUCCCc -3'
miRNA:   3'- -GGuUGCAGCUUGaCCc----GCCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 44209 0.66 0.981188
Target:  5'- gCCGACGUCcGGCUcGGGCGccGAgggCUCg -3'
miRNA:   3'- -GGUUGCAGcUUGA-CCCGCcaCUa--GGG- -5'
10813 5' -53.8 NC_002794.1 + 104552 0.66 0.981188
Target:  5'- gCCAGCGUC-AGCUGGauGCGGUcca-CCa -3'
miRNA:   3'- -GGUUGCAGcUUGACC--CGCCAcuagGG- -5'
10813 5' -53.8 NC_002794.1 + 15835 0.67 0.979069
Target:  5'- aCCAGCGuccugcUCGAACUGaa-GGUGAacggcacccgggUCCCg -3'
miRNA:   3'- -GGUUGC------AGCUUGACccgCCACU------------AGGG- -5'
10813 5' -53.8 NC_002794.1 + 89955 0.67 0.979069
Target:  5'- gCCGACGUCGAgGCguucGGaccGUGGUGcgCCg -3'
miRNA:   3'- -GGUUGCAGCU-UGa---CC---CGCCACuaGGg -5'
10813 5' -53.8 NC_002794.1 + 20527 0.67 0.976778
Target:  5'- gCCAACGgacuggcguUCGcGACgacGGGCGaccgGAUCCCg -3'
miRNA:   3'- -GGUUGC---------AGC-UUGa--CCCGCca--CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 58067 0.67 0.974307
Target:  5'- cCCGGCGgcggCGGGacGGGCGGcccgGcgCCCg -3'
miRNA:   3'- -GGUUGCa---GCUUgaCCCGCCa---CuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 95084 0.67 0.968803
Target:  5'- uCCAgugcuACGagGAGCUGGccGCGGUG--CCCa -3'
miRNA:   3'- -GGU-----UGCagCUUGACC--CGCCACuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 14293 0.67 0.968803
Target:  5'- gUCAGCGUCGAggcgcgggguaGCUuuugGGGCGaagacGUGAUCUg -3'
miRNA:   3'- -GGUUGCAGCU-----------UGA----CCCGC-----CACUAGGg -5'
10813 5' -53.8 NC_002794.1 + 145167 0.67 0.968803
Target:  5'- uCUGACGUCGGGCaUGGuGuCGGagaUGGUCgCCg -3'
miRNA:   3'- -GGUUGCAGCUUG-ACC-C-GCC---ACUAG-GG- -5'
10813 5' -53.8 NC_002794.1 + 159560 0.68 0.966999
Target:  5'- uCCcgUGUCGAGCcauucauuguuggcGGGCGG-GGUCCa -3'
miRNA:   3'- -GGuuGCAGCUUGa-------------CCCGCCaCUAGGg -5'
10813 5' -53.8 NC_002794.1 + 3331 0.68 0.965123
Target:  5'- cCCGAgGUCGAACcggccucccacgGGGgGGUGG-CCg -3'
miRNA:   3'- -GGUUgCAGCUUGa-----------CCCgCCACUaGGg -5'
10813 5' -53.8 NC_002794.1 + 150418 0.68 0.96217
Target:  5'- gCCGugGcccgCGAgGCUggaccuggaguccGGGCGGgugcgGAUCCCg -3'
miRNA:   3'- -GGUugCa---GCU-UGA-------------CCCGCCa----CUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.