miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10813 5' -53.8 NC_002794.1 + 65984 1.15 0.003073
Target:  5'- aCCAACGUCGAACUGGGCGGUGAUCCCg -3'
miRNA:   3'- -GGUUGCAGCUUGACCCGCCACUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 109534 0.77 0.578725
Target:  5'- uUCGGCGUCGGGCcGGGCGGaccGGUCUa -3'
miRNA:   3'- -GGUUGCAGCUUGaCCCGCCa--CUAGGg -5'
10813 5' -53.8 NC_002794.1 + 145344 0.74 0.717973
Target:  5'- cCCgAGCGggccCGAGCUGGGgGuGUGGUCaCCg -3'
miRNA:   3'- -GG-UUGCa---GCUUGACCCgC-CACUAG-GG- -5'
10813 5' -53.8 NC_002794.1 + 180810 0.74 0.746786
Target:  5'- gCGACGucUCGGACucUGGGCGGggagGAgCCCg -3'
miRNA:   3'- gGUUGC--AGCUUG--ACCCGCCa---CUaGGG- -5'
10813 5' -53.8 NC_002794.1 + 88711 0.73 0.765527
Target:  5'- gUCGGgGUCGAuugGGGCGGUGAcCUCg -3'
miRNA:   3'- -GGUUgCAGCUugaCCCGCCACUaGGG- -5'
10813 5' -53.8 NC_002794.1 + 149064 0.73 0.801578
Target:  5'- gUCGACGUCGAGC-GGGUGGUcaagCUCg -3'
miRNA:   3'- -GGUUGCAGCUUGaCCCGCCAcua-GGG- -5'
10813 5' -53.8 NC_002794.1 + 86925 0.72 0.827103
Target:  5'- cCCGugG-CGGGCaggcgGGGCGG-GAUCCg -3'
miRNA:   3'- -GGUugCaGCUUGa----CCCGCCaCUAGGg -5'
10813 5' -53.8 NC_002794.1 + 117199 0.71 0.866159
Target:  5'- aUCGGCGUCGGGCccGGGCGGc--UCCg -3'
miRNA:   3'- -GGUUGCAGCUUGa-CCCGCCacuAGGg -5'
10813 5' -53.8 NC_002794.1 + 97987 0.71 0.873389
Target:  5'- -uGACGggaaauaCGAGCUGGaCGGgGAUCCCg -3'
miRNA:   3'- ggUUGCa------GCUUGACCcGCCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 143409 0.71 0.880411
Target:  5'- aCCGGCG-CGGGCcGGGCGaaGGUCCg -3'
miRNA:   3'- -GGUUGCaGCUUGaCCCGCcaCUAGGg -5'
10813 5' -53.8 NC_002794.1 + 107387 0.7 0.906345
Target:  5'- gCGGcCGUCGGGCU-GGCGcUGAUCCUc -3'
miRNA:   3'- gGUU-GCAGCUUGAcCCGCcACUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 141250 0.7 0.917973
Target:  5'- cCCGGCGcCGGuccguucaACUGGaCGG-GGUCCCu -3'
miRNA:   3'- -GGUUGCaGCU--------UGACCcGCCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 153007 0.7 0.918531
Target:  5'- uCCAGCacggCGGACUGGGCgacgGGgacgggaacgacgcgGGUCCCu -3'
miRNA:   3'- -GGUUGca--GCUUGACCCG----CCa--------------CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 183300 0.7 0.92019
Target:  5'- cCCGGCGUCugGAAC-GGGCaGGUGAaauuggacacgucgCCCa -3'
miRNA:   3'- -GGUUGCAG--CUUGaCCCG-CCACUa-------------GGG- -5'
10813 5' -53.8 NC_002794.1 + 67182 0.69 0.92237
Target:  5'- cCCGAUcggGUCGGACcgaaaagcguccGGGCGGUGcgCUCg -3'
miRNA:   3'- -GGUUG---CAGCUUGa-----------CCCGCCACuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 121516 0.69 0.923446
Target:  5'- aCGACGUcCGAACc-GGCGGUcGUCUCg -3'
miRNA:   3'- gGUUGCA-GCUUGacCCGCCAcUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 90545 0.69 0.933704
Target:  5'- -uGACGUCGugugcACUGuauauauacccGGCGGcgGGUCCCg -3'
miRNA:   3'- ggUUGCAGCu----UGAC-----------CCGCCa-CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 122280 0.69 0.938489
Target:  5'- gCCAACGUCcuGGAC-GGGCGcgagGAgugCCCg -3'
miRNA:   3'- -GGUUGCAG--CUUGaCCCGCca--CUa--GGG- -5'
10813 5' -53.8 NC_002794.1 + 17010 0.69 0.938489
Target:  5'- cCCGGCGa-GAACacccGGCGGcGGUCCCa -3'
miRNA:   3'- -GGUUGCagCUUGac--CCGCCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 53256 0.69 0.938489
Target:  5'- gCCGGCGUCGccgcgcgacAACgGGGCGGcGAgcgaCCa -3'
miRNA:   3'- -GGUUGCAGC---------UUGaCCCGCCaCUag--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.