miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10813 5' -53.8 NC_002794.1 + 186690 0.68 0.959049
Target:  5'- uCCAggaucACGaCGAcGC-GGGCGGUGAagagCCCg -3'
miRNA:   3'- -GGU-----UGCaGCU-UGaCCCGCCACUa---GGG- -5'
10813 5' -53.8 NC_002794.1 + 67777 0.68 0.959049
Target:  5'- gCCAGC-UCGGACUcGGCcGGcGAUUCCu -3'
miRNA:   3'- -GGUUGcAGCUUGAcCCG-CCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 177442 0.68 0.955377
Target:  5'- uCCGGCGgggaUCGGACUcgucGCGGUcacGGUCCCa -3'
miRNA:   3'- -GGUUGC----AGCUUGAcc--CGCCA---CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 122446 0.68 0.951489
Target:  5'- aCAGCGagCGGcuGCUGGGCucGGUGAacgcgcucgCCCa -3'
miRNA:   3'- gGUUGCa-GCU--UGACCCG--CCACUa--------GGG- -5'
10813 5' -53.8 NC_002794.1 + 1159 0.68 0.951489
Target:  5'- cCCAucuuuucUCG-ACUGGGCGG-GGUUCCg -3'
miRNA:   3'- -GGUugc----AGCuUGACCCGCCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 148762 0.68 0.951489
Target:  5'- aCGACGUCGcGCUGGaGUGcGccUGGUaCCCg -3'
miRNA:   3'- gGUUGCAGCuUGACC-CGC-C--ACUA-GGG- -5'
10813 5' -53.8 NC_002794.1 + 42911 0.68 0.94738
Target:  5'- cCUGACGUaGcGCUGGGUccgGGUcacGAUCCCg -3'
miRNA:   3'- -GGUUGCAgCuUGACCCG---CCA---CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 88518 0.69 0.943048
Target:  5'- aCGGCGacccaUCGAaaACcGGaCGGUGAUCCCc -3'
miRNA:   3'- gGUUGC-----AGCU--UGaCCcGCCACUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 119379 0.69 0.943048
Target:  5'- gCGugGUCGAGCUGGGCcagcaccuGGcgccgcagCCCg -3'
miRNA:   3'- gGUugCAGCUUGACCCG--------CCacua----GGG- -5'
10813 5' -53.8 NC_002794.1 + 37872 0.69 0.942602
Target:  5'- gUCGGCGucUCGGGCggcggGGGCGGUGGcggcggcagcggcUCgCCg -3'
miRNA:   3'- -GGUUGC--AGCUUGa----CCCGCCACU-------------AG-GG- -5'
10813 5' -53.8 NC_002794.1 + 115703 0.69 0.94034
Target:  5'- aCC--CGUCGGucgcguacaggagccACUGGGCGGUcGGggggCCCu -3'
miRNA:   3'- -GGuuGCAGCU---------------UGACCCGCCA-CUa---GGG- -5'
10813 5' -53.8 NC_002794.1 + 53256 0.69 0.938489
Target:  5'- gCCGGCGUCGccgcgcgacAACgGGGCGGcGAgcgaCCa -3'
miRNA:   3'- -GGUUGCAGC---------UUGaCCCGCCaCUag--GG- -5'
10813 5' -53.8 NC_002794.1 + 17010 0.69 0.938489
Target:  5'- cCCGGCGa-GAACacccGGCGGcGGUCCCa -3'
miRNA:   3'- -GGUUGCagCUUGac--CCGCCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 122280 0.69 0.938489
Target:  5'- gCCAACGUCcuGGAC-GGGCGcgagGAgugCCCg -3'
miRNA:   3'- -GGUUGCAG--CUUGaCCCGCca--CUa--GGG- -5'
10813 5' -53.8 NC_002794.1 + 90545 0.69 0.933704
Target:  5'- -uGACGUCGugugcACUGuauauauacccGGCGGcgGGUCCCg -3'
miRNA:   3'- ggUUGCAGCu----UGAC-----------CCGCCa-CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 121516 0.69 0.923446
Target:  5'- aCGACGUcCGAACc-GGCGGUcGUCUCg -3'
miRNA:   3'- gGUUGCA-GCUUGacCCGCCAcUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 67182 0.69 0.92237
Target:  5'- cCCGAUcggGUCGGACcgaaaagcguccGGGCGGUGcgCUCg -3'
miRNA:   3'- -GGUUG---CAGCUUGa-----------CCCGCCACuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 183300 0.7 0.92019
Target:  5'- cCCGGCGUCugGAAC-GGGCaGGUGAaauuggacacgucgCCCa -3'
miRNA:   3'- -GGUUGCAG--CUUGaCCCG-CCACUa-------------GGG- -5'
10813 5' -53.8 NC_002794.1 + 153007 0.7 0.918531
Target:  5'- uCCAGCacggCGGACUGGGCgacgGGgacgggaacgacgcgGGUCCCu -3'
miRNA:   3'- -GGUUGca--GCUUGACCCG----CCa--------------CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 141250 0.7 0.917973
Target:  5'- cCCGGCGcCGGuccguucaACUGGaCGG-GGUCCCu -3'
miRNA:   3'- -GGUUGCaGCU--------UGACCcGCCaCUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.