miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10813 5' -53.8 NC_002794.1 + 1159 0.68 0.951489
Target:  5'- cCCAucuuuucUCG-ACUGGGCGG-GGUUCCg -3'
miRNA:   3'- -GGUugc----AGCuUGACCCGCCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 3331 0.68 0.965123
Target:  5'- cCCGAgGUCGAACcggccucccacgGGGgGGUGG-CCg -3'
miRNA:   3'- -GGUUgCAGCUUGa-----------CCCgCCACUaGGg -5'
10813 5' -53.8 NC_002794.1 + 10882 0.66 0.983143
Target:  5'- aCCGACGaCGGGC-GGGCGGaGGuguuUCgCCa -3'
miRNA:   3'- -GGUUGCaGCUUGaCCCGCCaCU----AG-GG- -5'
10813 5' -53.8 NC_002794.1 + 14293 0.67 0.968803
Target:  5'- gUCAGCGUCGAggcgcgggguaGCUuuugGGGCGaagacGUGAUCUg -3'
miRNA:   3'- -GGUUGCAGCU-----------UGA----CCCGC-----CACUAGGg -5'
10813 5' -53.8 NC_002794.1 + 14662 0.66 0.986588
Target:  5'- gCGGCGUCGGuccgACUcGcGGCGGcGGUCgCg -3'
miRNA:   3'- gGUUGCAGCU----UGA-C-CCGCCaCUAGgG- -5'
10813 5' -53.8 NC_002794.1 + 15835 0.67 0.979069
Target:  5'- aCCAGCGuccugcUCGAACUGaa-GGUGAacggcacccgggUCCCg -3'
miRNA:   3'- -GGUUGC------AGCUUGACccgCCACU------------AGGG- -5'
10813 5' -53.8 NC_002794.1 + 17010 0.69 0.938489
Target:  5'- cCCGGCGa-GAACacccGGCGGcGGUCCCa -3'
miRNA:   3'- -GGUUGCagCUUGac--CCGCCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 17124 0.66 0.988093
Target:  5'- uCCGACgGUCGAagccgGCgaaacGGCGGUaGcgCCCg -3'
miRNA:   3'- -GGUUG-CAGCU-----UGac---CCGCCA-CuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 20527 0.67 0.976778
Target:  5'- gCCAACGgacuggcguUCGcGACgacGGGCGaccgGAUCCCg -3'
miRNA:   3'- -GGUUGC---------AGC-UUGa--CCCGCca--CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 37872 0.69 0.942602
Target:  5'- gUCGGCGucUCGGGCggcggGGGCGGUGGcggcggcagcggcUCgCCg -3'
miRNA:   3'- -GGUUGC--AGCUUGa----CCCGCCACU-------------AG-GG- -5'
10813 5' -53.8 NC_002794.1 + 42911 0.68 0.94738
Target:  5'- cCUGACGUaGcGCUGGGUccgGGUcacGAUCCCg -3'
miRNA:   3'- -GGUUGCAgCuUGACCCG---CCA---CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 43452 0.66 0.987656
Target:  5'- gCGAUGUCGAAgUGGcugaccuugcacucGUGGUugaggaagcgGAUCCCc -3'
miRNA:   3'- gGUUGCAGCUUgACC--------------CGCCA----------CUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 44209 0.66 0.981188
Target:  5'- gCCGACGUCcGGCUcGGGCGccGAgggCUCg -3'
miRNA:   3'- -GGUUGCAGcUUGA-CCCGCcaCUa--GGG- -5'
10813 5' -53.8 NC_002794.1 + 53256 0.69 0.938489
Target:  5'- gCCGGCGUCGccgcgcgacAACgGGGCGGcGAgcgaCCa -3'
miRNA:   3'- -GGUUGCAGC---------UUGaCCCGCCaCUag--GG- -5'
10813 5' -53.8 NC_002794.1 + 56038 0.66 0.981188
Target:  5'- gCAGCGgcagaaGAGCgUGGGCaGGUGGaagUUCCa -3'
miRNA:   3'- gGUUGCag----CUUG-ACCCG-CCACU---AGGG- -5'
10813 5' -53.8 NC_002794.1 + 58067 0.67 0.974307
Target:  5'- cCCGGCGgcggCGGGacGGGCGGcccgGcgCCCg -3'
miRNA:   3'- -GGUUGCa---GCUUgaCCCGCCa---CuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 65984 1.15 0.003073
Target:  5'- aCCAACGUCGAACUGGGCGGUGAUCCCg -3'
miRNA:   3'- -GGUUGCAGCUUGACCCGCCACUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 67182 0.69 0.92237
Target:  5'- cCCGAUcggGUCGGACcgaaaagcguccGGGCGGUGcgCUCg -3'
miRNA:   3'- -GGUUG---CAGCUUGa-----------CCCGCCACuaGGG- -5'
10813 5' -53.8 NC_002794.1 + 67777 0.68 0.959049
Target:  5'- gCCAGC-UCGGACUcGGCcGGcGAUUCCu -3'
miRNA:   3'- -GGUUGcAGCUUGAcCCG-CCaCUAGGG- -5'
10813 5' -53.8 NC_002794.1 + 86925 0.72 0.827103
Target:  5'- cCCGugG-CGGGCaggcgGGGCGG-GAUCCg -3'
miRNA:   3'- -GGUugCaGCUUGa----CCCGCCaCUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.