miRNA display CGI


Results 1 - 20 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10814 5' -67.5 NC_002794.1 + 152322 0.66 0.522591
Target:  5'- cCUCCGuuuucugugcgaguCGGUCCaCGCGCUcuaCgGCCGCu -3'
miRNA:   3'- -GAGGCu-------------GCCGGG-GCGCGGc--GgCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 79433 0.66 0.519051
Target:  5'- -cCCGGCGGCggcggcggcgaCCgGCGCggagacgacgaCGCCGCCa- -3'
miRNA:   3'- gaGGCUGCCG-----------GGgCGCG-----------GCGGCGGcg -5'
10814 5' -67.5 NC_002794.1 + 23247 0.66 0.519051
Target:  5'- -gCCGuGCGaGCCUC-CGCCGCCGgaaCCGUu -3'
miRNA:   3'- gaGGC-UGC-CGGGGcGCGGCGGC---GGCG- -5'
10814 5' -67.5 NC_002794.1 + 75982 0.66 0.519051
Target:  5'- -cCCGGCGGCCUUcaCGuUCGCC-CCGCu -3'
miRNA:   3'- gaGGCUGCCGGGGc-GC-GGCGGcGGCG- -5'
10814 5' -67.5 NC_002794.1 + 84739 0.66 0.519051
Target:  5'- -aCCGACGGCaaCGC-CaCGaCCGgCCGCg -3'
miRNA:   3'- gaGGCUGCCGggGCGcG-GC-GGC-GGCG- -5'
10814 5' -67.5 NC_002794.1 + 105650 0.66 0.519051
Target:  5'- uCUCCGucucgccgcgGCGcGCUCCGC-CCGgaCCGCCGg -3'
miRNA:   3'- -GAGGC----------UGC-CGGGGCGcGGC--GGCGGCg -5'
10814 5' -67.5 NC_002794.1 + 129157 0.66 0.519051
Target:  5'- -gUCG-CGGCCCuCGCgGCCGaUgGCCGUu -3'
miRNA:   3'- gaGGCuGCCGGG-GCG-CGGC-GgCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 44717 0.66 0.519051
Target:  5'- -aCCG-CGGCgaCGUcgGCCGgCGCCGCc -3'
miRNA:   3'- gaGGCuGCCGggGCG--CGGCgGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 18553 0.66 0.519051
Target:  5'- --aCGGCGGCgaCCGCGaCCGUgcCCGCg -3'
miRNA:   3'- gagGCUGCCGg-GGCGC-GGCGgcGGCG- -5'
10814 5' -67.5 NC_002794.1 + 117410 0.66 0.519051
Target:  5'- -aCCGuCGcGaCCCGCuGCaggaGCUGCCGCg -3'
miRNA:   3'- gaGGCuGC-CgGGGCG-CGg---CGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 184280 0.66 0.519051
Target:  5'- uCUUCuuCGuCCCCG-GCCGCCGCCu- -3'
miRNA:   3'- -GAGGcuGCcGGGGCgCGGCGGCGGcg -5'
10814 5' -67.5 NC_002794.1 + 131240 0.66 0.519051
Target:  5'- -cCCGA---CCCCGcCGCCGgaCGCCGCc -3'
miRNA:   3'- gaGGCUgccGGGGC-GCGGCg-GCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 53532 0.66 0.519051
Target:  5'- -gCCGugGGCgCgGCgGCCGCacaGcCCGUg -3'
miRNA:   3'- gaGGCugCCGgGgCG-CGGCGg--C-GGCG- -5'
10814 5' -67.5 NC_002794.1 + 129245 0.66 0.519051
Target:  5'- gCUCCGGCGGaCUCgggucgaGCGCC-UCGUCGUg -3'
miRNA:   3'- -GAGGCUGCC-GGGg------CGCGGcGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 194771 0.66 0.516401
Target:  5'- gCUCCGAgaaCGGCCggcaCGCGCgcagcggcucccagUGCCccaccaGCCGCa -3'
miRNA:   3'- -GAGGCU---GCCGGg---GCGCG--------------GCGG------CGGCG- -5'
10814 5' -67.5 NC_002794.1 + 84164 0.66 0.510241
Target:  5'- cCUCCucuCGGCCCaGCGCuCGgcCCGgCGCu -3'
miRNA:   3'- -GAGGcu-GCCGGGgCGCG-GC--GGCgGCG- -5'
10814 5' -67.5 NC_002794.1 + 188793 0.66 0.510241
Target:  5'- --gCGGcCGGCCCCgccgaGCGCCGuCCaGgCGCa -3'
miRNA:   3'- gagGCU-GCCGGGG-----CGCGGC-GG-CgGCG- -5'
10814 5' -67.5 NC_002794.1 + 74257 0.66 0.510241
Target:  5'- cCUCCGcCGGCacauccugaCCGCGCagaccaGCCuCUGCu -3'
miRNA:   3'- -GAGGCuGCCGg--------GGCGCGg-----CGGcGGCG- -5'
10814 5' -67.5 NC_002794.1 + 19284 0.66 0.510241
Target:  5'- uCUCC--UGGCCUggagccucguCGCGUCGCUGaCCGCc -3'
miRNA:   3'- -GAGGcuGCCGGG----------GCGCGGCGGC-GGCG- -5'
10814 5' -67.5 NC_002794.1 + 34938 0.66 0.510241
Target:  5'- -cCCGGCuGUCCC-CGgC-CCGCCGCg -3'
miRNA:   3'- gaGGCUGcCGGGGcGCgGcGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.