miRNA display CGI


Results 1 - 20 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10814 5' -67.5 NC_002794.1 + 65746 1.09 0.000479
Target:  5'- cCUCCGACGGCCCCGCGCCGCCGCCGCc -3'
miRNA:   3'- -GAGGCUGCCGGGGCGCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 82910 0.89 0.013087
Target:  5'- gUCCGccucGCGGCCCCGcCGCCGUCGCCGCu -3'
miRNA:   3'- gAGGC----UGCCGGGGC-GCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 151582 0.86 0.021532
Target:  5'- -cCCGGCGGCg-CGCGCCGCCGCCGCg -3'
miRNA:   3'- gaGGCUGCCGggGCGCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 61531 0.86 0.02378
Target:  5'- -gCCGGCGGCCgCCGCGaagacgaCGCCGCCGCg -3'
miRNA:   3'- gaGGCUGCCGG-GGCGCg------GCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 60645 0.85 0.028284
Target:  5'- -gCCGGCGGCgCCggccacccggcgCGCGCCGCCGCCGCc -3'
miRNA:   3'- gaGGCUGCCG-GG------------GCGCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 192632 0.83 0.03612
Target:  5'- gUCgGGCGGCCgcuccagCCGCGCCGCCGCgCGCu -3'
miRNA:   3'- gAGgCUGCCGG-------GGCGCGGCGGCG-GCG- -5'
10814 5' -67.5 NC_002794.1 + 53740 0.83 0.03621
Target:  5'- -aUCGcCGGCCgCCGCuGCCGCCGCCGCu -3'
miRNA:   3'- gaGGCuGCCGG-GGCG-CGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 11799 0.83 0.038987
Target:  5'- gUCCGugGcGCCgCCGcCGCCGUCGCCGCc -3'
miRNA:   3'- gAGGCugC-CGG-GGC-GCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 107261 0.83 0.038987
Target:  5'- -cCCGGCGGagCCGCGCCGuCCGCCGCc -3'
miRNA:   3'- gaGGCUGCCggGGCGCGGC-GGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 118662 0.83 0.039958
Target:  5'- gUCCGugGGCgcgacgCCCGCgGCCGCCGCCGg -3'
miRNA:   3'- gAGGCugCCG------GGGCG-CGGCGGCGGCg -5'
10814 5' -67.5 NC_002794.1 + 62570 0.82 0.041972
Target:  5'- -cCCGACGaaCCCaGCGCCGCCGCCGCc -3'
miRNA:   3'- gaGGCUGCcgGGG-CGCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 181770 0.81 0.051068
Target:  5'- -gCCGAUGGCgCCGCGCCGCCGCg-- -3'
miRNA:   3'- gaGGCUGCCGgGGCGCGGCGGCGgcg -5'
10814 5' -67.5 NC_002794.1 + 107180 0.81 0.051068
Target:  5'- --gCGGCGGagCCgGCGCCGCCGCCGCc -3'
miRNA:   3'- gagGCUGCCg-GGgCGCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 49276 0.81 0.053626
Target:  5'- gCUCCaACGGCCCgGgCGCCGCCGCCu- -3'
miRNA:   3'- -GAGGcUGCCGGGgC-GCGGCGGCGGcg -5'
10814 5' -67.5 NC_002794.1 + 72729 0.8 0.057698
Target:  5'- --aUGACGGCCCCGCGCUcCCGCgGCg -3'
miRNA:   3'- gagGCUGCCGGGGCGCGGcGGCGgCG- -5'
10814 5' -67.5 NC_002794.1 + 31391 0.8 0.057698
Target:  5'- -gUCGGCGGCCCCGcCGCgC-CCGCCGCg -3'
miRNA:   3'- gaGGCUGCCGGGGC-GCG-GcGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 81549 0.8 0.057698
Target:  5'- -cUgGACGGCUgCCGcCGCCGCCGCCGCc -3'
miRNA:   3'- gaGgCUGCCGG-GGC-GCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 194030 0.8 0.060578
Target:  5'- -gCCGGC-GCCUCGCccGCCGCCGCCGCc -3'
miRNA:   3'- gaGGCUGcCGGGGCG--CGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 111617 0.8 0.063597
Target:  5'- -gCCGGCggGGCCgCCGCgGCCGCCGCCGg -3'
miRNA:   3'- gaGGCUG--CCGG-GGCG-CGGCGGCGGCg -5'
10814 5' -67.5 NC_002794.1 + 32266 0.8 0.064217
Target:  5'- -cUCGACGGCCggCCGaucggcgagcgacgcCGCCGCCGCCGCg -3'
miRNA:   3'- gaGGCUGCCGG--GGC---------------GCGGCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.