miRNA display CGI


Results 21 - 40 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10814 5' -67.5 NC_002794.1 + 74257 0.66 0.510241
Target:  5'- cCUCCGcCGGCacauccugaCCGCGCagaccaGCCuCUGCu -3'
miRNA:   3'- -GAGGCuGCCGg--------GGCGCGg-----CGGcGGCG- -5'
10814 5' -67.5 NC_002794.1 + 188793 0.66 0.510241
Target:  5'- --gCGGcCGGCCCCgccgaGCGCCGuCCaGgCGCa -3'
miRNA:   3'- gagGCU-GCCGGGG-----CGCGGC-GG-CgGCG- -5'
10814 5' -67.5 NC_002794.1 + 84164 0.66 0.510241
Target:  5'- cCUCCucuCGGCCCaGCGCuCGgcCCGgCGCu -3'
miRNA:   3'- -GAGGcu-GCCGGGgCGCG-GC--GGCgGCG- -5'
10814 5' -67.5 NC_002794.1 + 2600 0.66 0.510241
Target:  5'- gUCCaagcAUGGCaccuaCCCG-GCCGCCGgCGCg -3'
miRNA:   3'- gAGGc---UGCCG-----GGGCgCGGCGGCgGCG- -5'
10814 5' -67.5 NC_002794.1 + 57944 0.66 0.509364
Target:  5'- -gCCGACGcGCugcgcagCCUGUGCCacCCGCUGCu -3'
miRNA:   3'- gaGGCUGC-CG-------GGGCGCGGc-GGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 193703 0.66 0.508487
Target:  5'- gUCCGAUucccccucgcccGCCCCGCcgguguccucGCCGCCcGCgGCu -3'
miRNA:   3'- gAGGCUGc-----------CGGGGCG----------CGGCGG-CGgCG- -5'
10814 5' -67.5 NC_002794.1 + 148634 0.66 0.504985
Target:  5'- uCUCCGAucgcggcggcgugcuCGGCUaCGCGCCGaCCGaggaGCg -3'
miRNA:   3'- -GAGGCU---------------GCCGGgGCGCGGC-GGCgg--CG- -5'
10814 5' -67.5 NC_002794.1 + 124462 0.66 0.501495
Target:  5'- gUUCGuCG--UCgGCGUCGCCGCCGCa -3'
miRNA:   3'- gAGGCuGCcgGGgCGCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 184026 0.66 0.501495
Target:  5'- -gCCGccACGGCaCCgCGCGCagcgCGCgGUCGCg -3'
miRNA:   3'- gaGGC--UGCCG-GG-GCGCG----GCGgCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 110656 0.66 0.501495
Target:  5'- uCUCCGGCGGCUgCagacaGUGCaGCaCGCUGUg -3'
miRNA:   3'- -GAGGCUGCCGGgG-----CGCGgCG-GCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 42649 0.66 0.501495
Target:  5'- -gUCG-CGGCCgaagCCGaCGgCGCCGCCGg -3'
miRNA:   3'- gaGGCuGCCGG----GGC-GCgGCGGCGGCg -5'
10814 5' -67.5 NC_002794.1 + 19501 0.66 0.501495
Target:  5'- --aCGACGGCggaggUCGCGCCGCucggagCGCCGg -3'
miRNA:   3'- gagGCUGCCGg----GGCGCGGCG------GCGGCg -5'
10814 5' -67.5 NC_002794.1 + 75577 0.66 0.501495
Target:  5'- uCUCCGcgcagUGGCUgCCG-GCCGCCG-CGCa -3'
miRNA:   3'- -GAGGCu----GCCGG-GGCgCGGCGGCgGCG- -5'
10814 5' -67.5 NC_002794.1 + 78665 0.66 0.501495
Target:  5'- uUCUGGCacuccaCCUCG-GCCGCCGgCCGCa -3'
miRNA:   3'- gAGGCUGcc----GGGGCgCGGCGGC-GGCG- -5'
10814 5' -67.5 NC_002794.1 + 99548 0.66 0.501495
Target:  5'- -gCCG-CGGaaaCCGCGCgCGCCcuCCGCg -3'
miRNA:   3'- gaGGCuGCCgg-GGCGCG-GCGGc-GGCG- -5'
10814 5' -67.5 NC_002794.1 + 84775 0.66 0.501495
Target:  5'- gUCCGAggccCGGCCCgGCucucucucGCCcaCCGUCGCc -3'
miRNA:   3'- gAGGCU----GCCGGGgCG--------CGGc-GGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 102978 0.66 0.501495
Target:  5'- --gCGGCGGCUCCGguuuauuguCGUCGCUcgacucgaGCCGCu -3'
miRNA:   3'- gagGCUGCCGGGGC---------GCGGCGG--------CGGCG- -5'
10814 5' -67.5 NC_002794.1 + 125947 0.66 0.501495
Target:  5'- cCUCgUGGCcGCCUgCGCGCuCGUCGCCGa -3'
miRNA:   3'- -GAG-GCUGcCGGG-GCGCG-GCGGCGGCg -5'
10814 5' -67.5 NC_002794.1 + 89693 0.66 0.501495
Target:  5'- gUUCGcggcgaauauaaACGGCgCCGCGgUGCCGauCCGCg -3'
miRNA:   3'- gAGGC------------UGCCGgGGCGCgGCGGC--GGCG- -5'
10814 5' -67.5 NC_002794.1 + 81594 0.66 0.501495
Target:  5'- ---aGACGGaCCCGCgGCCGgaGUCGCg -3'
miRNA:   3'- gaggCUGCCgGGGCG-CGGCggCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.