miRNA display CGI


Results 1 - 20 of 539 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10814 5' -67.5 NC_002794.1 + 129 0.66 0.475667
Target:  5'- -gCCGAcCGGagCCCGgGaCCGCCGCaggggCGCa -3'
miRNA:   3'- gaGGCU-GCCg-GGGCgC-GGCGGCG-----GCG- -5'
10814 5' -67.5 NC_002794.1 + 223 0.68 0.370181
Target:  5'- gUCCagacggGACGGgaaaacgaaacccaCCCCGgacUGCCGCCGCgCGCg -3'
miRNA:   3'- gAGG------CUGCC--------------GGGGC---GCGGCGGCG-GCG- -5'
10814 5' -67.5 NC_002794.1 + 285 0.73 0.201396
Target:  5'- --aCGGCGGCCCuggCGCGCCGaaCGCCGg -3'
miRNA:   3'- gagGCUGCCGGG---GCGCGGCg-GCGGCg -5'
10814 5' -67.5 NC_002794.1 + 617 0.67 0.441481
Target:  5'- gUCaGGCGGCCCgGUGuggcguucgccucCCGuccCCGCCGCg -3'
miRNA:   3'- gAGgCUGCCGGGgCGC-------------GGC---GGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 2600 0.66 0.510241
Target:  5'- gUCCaagcAUGGCaccuaCCCG-GCCGCCGgCGCg -3'
miRNA:   3'- gAGGc---UGCCG-----GGGCgCGGCGGCgGCG- -5'
10814 5' -67.5 NC_002794.1 + 6377 0.66 0.492814
Target:  5'- gUCCc-UGGCCCUGCGCCGggaaCUGCUGa -3'
miRNA:   3'- gAGGcuGCCGGGGCGCGGC----GGCGGCg -5'
10814 5' -67.5 NC_002794.1 + 8322 0.69 0.34381
Target:  5'- -aCCGcCGcGCCCCGCGCCaaaCGCCcCa -3'
miRNA:   3'- gaGGCuGC-CGGGGCGCGGcg-GCGGcG- -5'
10814 5' -67.5 NC_002794.1 + 10317 0.72 0.230071
Target:  5'- aCUCCGACGaCUcggCCGuCGUCGgCGCCGCg -3'
miRNA:   3'- -GAGGCUGCcGG---GGC-GCGGCgGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 10988 0.7 0.271834
Target:  5'- gCUCCGAggccgcaaguggacCGuGUCCCGCaCCGCgGCCGUc -3'
miRNA:   3'- -GAGGCU--------------GC-CGGGGCGcGGCGgCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 11799 0.83 0.038987
Target:  5'- gUCCGugGcGCCgCCGcCGCCGUCGCCGCc -3'
miRNA:   3'- gAGGCugC-CGG-GGC-GCGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 11851 0.7 0.273579
Target:  5'- cCUCCGACcGCCggcgacgaCCGC-CCGCC-CCGCg -3'
miRNA:   3'- -GAGGCUGcCGG--------GGCGcGGCGGcGGCG- -5'
10814 5' -67.5 NC_002794.1 + 11986 0.69 0.357895
Target:  5'- gUCCGGCGGCUgguugcugCUGUGUggacugaugugCGCCGCCGg -3'
miRNA:   3'- gAGGCUGCCGG--------GGCGCG-----------GCGGCGGCg -5'
10814 5' -67.5 NC_002794.1 + 12182 0.69 0.316853
Target:  5'- -gCCGAC-GCCgCCGCgGCCgGgCGCCGCu -3'
miRNA:   3'- gaGGCUGcCGG-GGCG-CGG-CgGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 12226 0.76 0.110476
Target:  5'- -gUCGGCGGCgCCgGCGgCGCCGuCCGCg -3'
miRNA:   3'- gaGGCUGCCG-GGgCGCgGCGGC-GGCG- -5'
10814 5' -67.5 NC_002794.1 + 12298 0.7 0.303983
Target:  5'- gUCCGAaaCGGgCCCGCGggacuccuCCGCgGuCCGCg -3'
miRNA:   3'- gAGGCU--GCCgGGGCGC--------GGCGgC-GGCG- -5'
10814 5' -67.5 NC_002794.1 + 12710 0.68 0.365087
Target:  5'- -gCCGugGGCUgCGCGUU-CCGCgGCg -3'
miRNA:   3'- gaGGCugCCGGgGCGCGGcGGCGgCG- -5'
10814 5' -67.5 NC_002794.1 + 12735 0.69 0.337603
Target:  5'- --aCGAgGGCCCgguccgcuaccaggaGCugccgcucuuGCCGCCGCCGCg -3'
miRNA:   3'- gagGCUgCCGGGg--------------CG----------CGGCGGCGGCG- -5'
10814 5' -67.5 NC_002794.1 + 13114 0.68 0.365087
Target:  5'- gUUCGGCggGGUCgCCGCGCgGCuCGCuCGCg -3'
miRNA:   3'- gAGGCUG--CCGG-GGCGCGgCG-GCG-GCG- -5'
10814 5' -67.5 NC_002794.1 + 13644 0.66 0.474817
Target:  5'- gUUCGACcugcagcuguccuGGCa-CGUGCCGCCGCCa- -3'
miRNA:   3'- gAGGCUG-------------CCGggGCGCGGCGGCGGcg -5'
10814 5' -67.5 NC_002794.1 + 13845 0.79 0.073548
Target:  5'- cCUCCccACcGCCUCGuCGCCGCCGCCGCg -3'
miRNA:   3'- -GAGGc-UGcCGGGGC-GCGGCGGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.