miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 3' -64.1 NC_002794.1 + 94003 0.65 0.674949
Target:  5'- gCCggCGCCG-GCGGCGG-GCCggcggguUCCgccggCGg -3'
miRNA:   3'- -GGa-GCGGCuCGCCGCCgCGG-------AGGa----GC- -5'
10815 3' -64.1 NC_002794.1 + 82366 0.65 0.673076
Target:  5'- uCCUCGCCGcccgacaccgccgcGGCGgaccGCGGCGCCcacaaacaCgCUCGc -3'
miRNA:   3'- -GGAGCGGC--------------UCGC----CGCCGCGGa-------G-GAGC- -5'
10815 3' -64.1 NC_002794.1 + 107170 0.66 0.670265
Target:  5'- --cCGCCGcuacGCGGCGGagccggcgccgccgcCGCCggCCUCGc -3'
miRNA:   3'- ggaGCGGCu---CGCCGCC---------------GCGGa-GGAGC- -5'
10815 3' -64.1 NC_002794.1 + 76441 0.66 0.666513
Target:  5'- uCCUCccCCGAGCccGUGGCGCCcgccCCUCc -3'
miRNA:   3'- -GGAGc-GGCUCGc-CGCCGCGGa---GGAGc -5'
10815 3' -64.1 NC_002794.1 + 135967 0.66 0.666513
Target:  5'- uCCUCcUCGAGCc-CGGCGCCgggcUCCUCu -3'
miRNA:   3'- -GGAGcGGCUCGccGCCGCGG----AGGAGc -5'
10815 3' -64.1 NC_002794.1 + 184495 0.66 0.666513
Target:  5'- cCCggaCGcCCGGGCGGCGcGgGCC-CCgcgcgCGg -3'
miRNA:   3'- -GGa--GC-GGCUCGCCGC-CgCGGaGGa----GC- -5'
10815 3' -64.1 NC_002794.1 + 181534 0.66 0.657117
Target:  5'- gCC-CGCCGccGGCGGgcCGGCGCU--CUCGg -3'
miRNA:   3'- -GGaGCGGC--UCGCC--GCCGCGGagGAGC- -5'
10815 3' -64.1 NC_002794.1 + 70338 0.66 0.657117
Target:  5'- --aCGCCGA-CGGCcgGGCGCC-CgCUCGu -3'
miRNA:   3'- ggaGCGGCUcGCCG--CCGCGGaG-GAGC- -5'
10815 3' -64.1 NC_002794.1 + 123781 0.66 0.657117
Target:  5'- gCCUCcguGuuGgaGGCGGUGGCGCCg-UUCGg -3'
miRNA:   3'- -GGAG---CggC--UCGCCGCCGCGGagGAGC- -5'
10815 3' -64.1 NC_002794.1 + 99595 0.66 0.656177
Target:  5'- --gCGCgGcGGCGGCGcgcgcucGCGCCgCCUCGg -3'
miRNA:   3'- ggaGCGgC-UCGCCGC-------CGCGGaGGAGC- -5'
10815 3' -64.1 NC_002794.1 + 193871 0.66 0.651471
Target:  5'- cCCUCcCCGGGCcccGCGucgcccuccaccgccGcCGCCUCCUCGu -3'
miRNA:   3'- -GGAGcGGCUCGc--CGC---------------C-GCGGAGGAGC- -5'
10815 3' -64.1 NC_002794.1 + 66572 0.66 0.647705
Target:  5'- -aUCGCCGGcGcCGGCGGCaGCC-CCg-- -3'
miRNA:   3'- ggAGCGGCU-C-GCCGCCG-CGGaGGagc -5'
10815 3' -64.1 NC_002794.1 + 122316 0.66 0.647705
Target:  5'- gCCgUCGCCGuGCGcGUGGCGUUggcCCUgGc -3'
miRNA:   3'- -GG-AGCGGCuCGC-CGCCGCGGa--GGAgC- -5'
10815 3' -64.1 NC_002794.1 + 47337 0.66 0.647705
Target:  5'- gCUC-CC--GCGGCGGCGgCCUCCg-- -3'
miRNA:   3'- gGAGcGGcuCGCCGCCGC-GGAGGagc -5'
10815 3' -64.1 NC_002794.1 + 69591 0.66 0.647705
Target:  5'- gCgUCGgaCGAGCGGgaGGcCGCCUCCaCGa -3'
miRNA:   3'- -GgAGCg-GCUCGCCg-CC-GCGGAGGaGC- -5'
10815 3' -64.1 NC_002794.1 + 113020 0.66 0.644879
Target:  5'- gCUUGCCGuucugcGCGGCgcauucauccgucaGGCGCg-CCUCGa -3'
miRNA:   3'- gGAGCGGCu-----CGCCG--------------CCGCGgaGGAGC- -5'
10815 3' -64.1 NC_002794.1 + 122170 0.66 0.638282
Target:  5'- aCCUgGCCGAGCacGGCGcGCGCgUgUgCGa -3'
miRNA:   3'- -GGAgCGGCUCG--CCGC-CGCGgAgGaGC- -5'
10815 3' -64.1 NC_002794.1 + 148544 0.66 0.638282
Target:  5'- gCCUCGUCGGcuGCGcGCGGCucuuUCUgCUCGg -3'
miRNA:   3'- -GGAGCGGCU--CGC-CGCCGc---GGAgGAGC- -5'
10815 3' -64.1 NC_002794.1 + 65169 0.66 0.634511
Target:  5'- uCCguggCGCCGAGacCGGCgGGUGCCggcgaggucggacCCUCa -3'
miRNA:   3'- -GGa---GCGGCUC--GCCG-CCGCGGa------------GGAGc -5'
10815 3' -64.1 NC_002794.1 + 60175 0.66 0.628854
Target:  5'- gCC-CGCgCGGGCGcuCGGCcuGCCUCUUCa -3'
miRNA:   3'- -GGaGCG-GCUCGCc-GCCG--CGGAGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.