miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 102177 0.65 0.972652
Target:  5'- aUCGuGGCGcGCGGCgaggACCuGGCggCCGCCg -3'
miRNA:   3'- gAGCuCUGC-UGUCG----UGG-UUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 128152 0.65 0.972652
Target:  5'- -gCGAcGCGACGGCG---GCUCgCGCCg -3'
miRNA:   3'- gaGCUcUGCUGUCGUgguUGAG-GCGG- -5'
10815 5' -55 NC_002794.1 + 49 0.65 0.972652
Target:  5'- uCUCG-GACGAacg-GCCGACgcCCGCCa -3'
miRNA:   3'- -GAGCuCUGCUgucgUGGUUGa-GGCGG- -5'
10815 5' -55 NC_002794.1 + 74844 0.65 0.972652
Target:  5'- -aCGuGACGACccGGCcaACgGACUCCugGCCg -3'
miRNA:   3'- gaGCuCUGCUG--UCG--UGgUUGAGG--CGG- -5'
10815 5' -55 NC_002794.1 + 66044 0.65 0.972652
Target:  5'- gUCGGGcCGGCAGCGgCGGC-CUGUUc -3'
miRNA:   3'- gAGCUCuGCUGUCGUgGUUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 134466 0.65 0.972652
Target:  5'- uUCGGGACGGCGcucucGuCGCCAGa-CCGCg -3'
miRNA:   3'- gAGCUCUGCUGU-----C-GUGGUUgaGGCGg -5'
10815 5' -55 NC_002794.1 + 105440 0.65 0.972652
Target:  5'- -cCGcGcCGGCGGCGCCGucgUUCUGCCc -3'
miRNA:   3'- gaGCuCuGCUGUCGUGGUu--GAGGCGG- -5'
10815 5' -55 NC_002794.1 + 179537 0.65 0.972652
Target:  5'- ----cGACGACGGCGgUAGCcCCGCg -3'
miRNA:   3'- gagcuCUGCUGUCGUgGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 146870 0.65 0.972652
Target:  5'- uUCGGGugGGgGGCGCgG--UCgGCCg -3'
miRNA:   3'- gAGCUCugCUgUCGUGgUugAGgCGG- -5'
10815 5' -55 NC_002794.1 + 30982 0.65 0.972652
Target:  5'- cCUCcccGGCGACGGCggggucuucGCCGgACgucgCCGCCg -3'
miRNA:   3'- -GAGcu-CUGCUGUCG---------UGGU-UGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 184513 0.65 0.972652
Target:  5'- -gCGGGccccGCGcGCGGCGCgGGCgacgCCGCCc -3'
miRNA:   3'- gaGCUC----UGC-UGUCGUGgUUGa---GGCGG- -5'
10815 5' -55 NC_002794.1 + 112664 0.65 0.972652
Target:  5'- uCUCGcAGGCGGCGuucGUcuCCAGCUgCCGCg -3'
miRNA:   3'- -GAGC-UCUGCUGU---CGu-GGUUGA-GGCGg -5'
10815 5' -55 NC_002794.1 + 191508 0.65 0.971837
Target:  5'- -cCGAGAgGugcCAGCGCCGGgcgucggcccgcgcCUCcCGCCg -3'
miRNA:   3'- gaGCUCUgCu--GUCGUGGUU--------------GAG-GCGG- -5'
10815 5' -55 NC_002794.1 + 189613 0.66 0.969867
Target:  5'- -cCGAGACc----CGCCGACUCgGCCg -3'
miRNA:   3'- gaGCUCUGcugucGUGGUUGAGgCGG- -5'
10815 5' -55 NC_002794.1 + 62082 0.66 0.969867
Target:  5'- -gCGGcGACGACGGCgACgCGGCg-CGCCg -3'
miRNA:   3'- gaGCU-CUGCUGUCG-UG-GUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 67379 0.66 0.969867
Target:  5'- gUCGAaagaacGCGuCGGCGCCAGCgucggCGCCa -3'
miRNA:   3'- gAGCUc-----UGCuGUCGUGGUUGag---GCGG- -5'
10815 5' -55 NC_002794.1 + 126606 0.66 0.969867
Target:  5'- -cCGAGGC--CGGCGCCGACgUCGCg -3'
miRNA:   3'- gaGCUCUGcuGUCGUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 133920 0.66 0.969867
Target:  5'- -aCGAGACGGCGGC-CgcGC-CCGUCc -3'
miRNA:   3'- gaGCUCUGCUGUCGuGguUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 55600 0.66 0.969867
Target:  5'- uCUUGAaGCGGCGGaaCGCCAGC-CCGUg -3'
miRNA:   3'- -GAGCUcUGCUGUC--GUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 103926 0.66 0.969867
Target:  5'- -aCGcGGCGAgCAGCGCgCGuggCCGCCg -3'
miRNA:   3'- gaGCuCUGCU-GUCGUG-GUugaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.