miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10815 5' -55 NC_002794.1 + 187186 0.66 0.967801
Target:  5'- uCUCGcccagccGGAUGAcCAGCACCccgaccaucuccagcGGCUCCGgCu -3'
miRNA:   3'- -GAGC-------UCUGCU-GUCGUGG---------------UUGAGGCgG- -5'
10815 5' -55 NC_002794.1 + 89455 0.66 0.966886
Target:  5'- aUCG-GACGACccgcGGCuCCGgggACUCCgGCCu -3'
miRNA:   3'- gAGCuCUGCUG----UCGuGGU---UGAGG-CGG- -5'
10815 5' -55 NC_002794.1 + 103926 0.66 0.969867
Target:  5'- -aCGcGGCGAgCAGCGCgCGuggCCGCCg -3'
miRNA:   3'- gaGCuCUGCU-GUCGUG-GUugaGGCGG- -5'
10815 5' -55 NC_002794.1 + 55600 0.66 0.969867
Target:  5'- uCUUGAaGCGGCGGaaCGCCAGC-CCGUg -3'
miRNA:   3'- -GAGCUcUGCUGUC--GUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 133920 0.66 0.969867
Target:  5'- -aCGAGACGGCGGC-CgcGC-CCGUCc -3'
miRNA:   3'- gaGCUCUGCUGUCGuGguUGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 126606 0.66 0.969867
Target:  5'- -cCGAGGC--CGGCGCCGACgUCGCg -3'
miRNA:   3'- gaGCUCUGcuGUCGUGGUUGaGGCGg -5'
10815 5' -55 NC_002794.1 + 67379 0.66 0.969867
Target:  5'- gUCGAaagaacGCGuCGGCGCCAGCgucggCGCCa -3'
miRNA:   3'- gAGCUc-----UGCuGUCGUGGUUGag---GCGG- -5'
10815 5' -55 NC_002794.1 + 62082 0.66 0.969867
Target:  5'- -gCGGcGACGACGGCgACgCGGCg-CGCCg -3'
miRNA:   3'- gaGCU-CUGCUGUCG-UG-GUUGagGCGG- -5'
10815 5' -55 NC_002794.1 + 70338 0.66 0.966886
Target:  5'- -aCGccGACGGCcgGGCGCCcGCucgUCCGCCc -3'
miRNA:   3'- gaGCu-CUGCUG--UCGUGGuUG---AGGCGG- -5'
10815 5' -55 NC_002794.1 + 99388 0.66 0.966886
Target:  5'- -cCGAcGAUGGUGGCGCCG--UCCGCCc -3'
miRNA:   3'- gaGCU-CUGCUGUCGUGGUugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 62572 0.66 0.966886
Target:  5'- ----cGACGAaccCAGCGCCGcCgCCGCCg -3'
miRNA:   3'- gagcuCUGCU---GUCGUGGUuGaGGCGG- -5'
10815 5' -55 NC_002794.1 + 36491 0.66 0.966886
Target:  5'- uCUCGuacAGGCaGC-GCACCAcCUCgGCCa -3'
miRNA:   3'- -GAGC---UCUGcUGuCGUGGUuGAGgCGG- -5'
10815 5' -55 NC_002794.1 + 97496 0.66 0.966886
Target:  5'- --gGAGACGuGCAGCAUgAACUguaUCGUCa -3'
miRNA:   3'- gagCUCUGC-UGUCGUGgUUGA---GGCGG- -5'
10815 5' -55 NC_002794.1 + 115979 0.66 0.966886
Target:  5'- -gCGGGACGgggaGCGGCGCCGcggAgaCCGCg -3'
miRNA:   3'- gaGCUCUGC----UGUCGUGGU---UgaGGCGg -5'
10815 5' -55 NC_002794.1 + 126434 0.66 0.966886
Target:  5'- gUCGAGGUGugGGCGCC---UCgGCCc -3'
miRNA:   3'- gAGCUCUGCugUCGUGGuugAGgCGG- -5'
10815 5' -55 NC_002794.1 + 46723 0.66 0.966886
Target:  5'- cCUCcAGAUcaACAGCuuccugACCGACuUCCGCCg -3'
miRNA:   3'- -GAGcUCUGc-UGUCG------UGGUUG-AGGCGG- -5'
10815 5' -55 NC_002794.1 + 34334 0.66 0.966886
Target:  5'- -cCGcaAGGCGACGGcCGCgCcgUUCCGCCc -3'
miRNA:   3'- gaGC--UCUGCUGUC-GUG-GuuGAGGCGG- -5'
10815 5' -55 NC_002794.1 + 136434 0.66 0.966886
Target:  5'- -cCGGaGCGGCGGCugCG--UCCGCUg -3'
miRNA:   3'- gaGCUcUGCUGUCGugGUugAGGCGG- -5'
10815 5' -55 NC_002794.1 + 51094 0.66 0.966886
Target:  5'- gCUCGgaaaAGACGACcGCGCCucgcGCUCggaCGUCg -3'
miRNA:   3'- -GAGC----UCUGCUGuCGUGGu---UGAG---GCGG- -5'
10815 5' -55 NC_002794.1 + 49370 0.66 0.966886
Target:  5'- gUCGAuGugGAagaagcGCGCCAGg-CCGCCg -3'
miRNA:   3'- gAGCU-CugCUgu----CGUGGUUgaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.