Results 61 - 80 of 319 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10815 | 5' | -55 | NC_002794.1 | + | 126606 | 0.66 | 0.969867 |
Target: 5'- -cCGAGGC--CGGCGCCGACgUCGCg -3' miRNA: 3'- gaGCUCUGcuGUCGUGGUUGaGGCGg -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 67379 | 0.66 | 0.969867 |
Target: 5'- gUCGAaagaacGCGuCGGCGCCAGCgucggCGCCa -3' miRNA: 3'- gAGCUc-----UGCuGUCGUGGUUGag---GCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 62082 | 0.66 | 0.969867 |
Target: 5'- -gCGGcGACGACGGCgACgCGGCg-CGCCg -3' miRNA: 3'- gaGCU-CUGCUGUCG-UG-GUUGagGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 34334 | 0.66 | 0.966886 |
Target: 5'- -cCGcaAGGCGACGGcCGCgCcgUUCCGCCc -3' miRNA: 3'- gaGC--UCUGCUGUC-GUG-GuuGAGGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 46723 | 0.66 | 0.966886 |
Target: 5'- cCUCcAGAUcaACAGCuuccugACCGACuUCCGCCg -3' miRNA: 3'- -GAGcUCUGc-UGUCG------UGGUUG-AGGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 68932 | 0.66 | 0.963701 |
Target: 5'- cCUCGucgcccgcGGGCcGCGGCGCCGGCgccucucccuccUCCGCg -3' miRNA: 3'- -GAGC--------UCUGcUGUCGUGGUUG------------AGGCGg -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 129840 | 0.66 | 0.963701 |
Target: 5'- gUCGAGGCGG-AGCGgaAcCUCCGUCg -3' miRNA: 3'- gAGCUCUGCUgUCGUggUuGAGGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 124124 | 0.66 | 0.963701 |
Target: 5'- aCUCGAGagcGCGucucCGGCGCCcgggagcgguCUCCGCg -3' miRNA: 3'- -GAGCUC---UGCu---GUCGUGGuu--------GAGGCGg -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 136933 | 0.66 | 0.963701 |
Target: 5'- -cCGAGuuGACGGCGCCGAgauaguCcCCGCa -3' miRNA: 3'- gaGCUCugCUGUCGUGGUU------GaGGCGg -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 140607 | 0.66 | 0.963701 |
Target: 5'- -cCGAGACGGCGaacuCGCCGGcCUCCGa- -3' miRNA: 3'- gaGCUCUGCUGUc---GUGGUU-GAGGCgg -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 17253 | 0.66 | 0.964999 |
Target: 5'- ----cGACGGCGGCGacCCGGCUcgucacccgggcacgCCGCCg -3' miRNA: 3'- gagcuCUGCUGUCGU--GGUUGA---------------GGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 193266 | 0.66 | 0.966576 |
Target: 5'- -cCGAGcagcagcaacaGCGGCGuGCGCCGguagucgccguccGCUCCGCg -3' miRNA: 3'- gaGCUC-----------UGCUGU-CGUGGU-------------UGAGGCGg -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 159662 | 0.66 | 0.964999 |
Target: 5'- --gGAGGCGACGaucuGUACCGAUacguaaaccucacguUCCGUCa -3' miRNA: 3'- gagCUCUGCUGU----CGUGGUUG---------------AGGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 36012 | 0.66 | 0.966886 |
Target: 5'- gCUCG-GGCGGCGGaauccgccguCCGGCccggCCGCCc -3' miRNA: 3'- -GAGCuCUGCUGUCgu--------GGUUGa---GGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 18010 | 0.66 | 0.966886 |
Target: 5'- -aCGAgGACGGCGuGUuCCAACUguacgugacggCCGCCa -3' miRNA: 3'- gaGCU-CUGCUGU-CGuGGUUGA-----------GGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 62572 | 0.66 | 0.966886 |
Target: 5'- ----cGACGAaccCAGCGCCGcCgCCGCCg -3' miRNA: 3'- gagcuCUGCU---GUCGUGGUuGaGGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 36491 | 0.66 | 0.966886 |
Target: 5'- uCUCGuacAGGCaGC-GCACCAcCUCgGCCa -3' miRNA: 3'- -GAGC---UCUGcUGuCGUGGUuGAGgCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 97496 | 0.66 | 0.966886 |
Target: 5'- --gGAGACGuGCAGCAUgAACUguaUCGUCa -3' miRNA: 3'- gagCUCUGC-UGUCGUGgUUGA---GGCGG- -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 115979 | 0.66 | 0.966886 |
Target: 5'- -gCGGGACGgggaGCGGCGCCGcggAgaCCGCg -3' miRNA: 3'- gaGCUCUGC----UGUCGUGGU---UgaGGCGg -5' |
|||||||
10815 | 5' | -55 | NC_002794.1 | + | 126434 | 0.66 | 0.966886 |
Target: 5'- gUCGAGGUGugGGCGCC---UCgGCCc -3' miRNA: 3'- gAGCUCUGCugUCGUGGuugAGgCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home